RnoINT0076776 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5708357-5709051:+
Coord C1 exon
chr20:5708357-5708484
Coord A exon
chr20:5708485-5708885
Coord C2 exon
chr20:5708886-5709051
Length
401 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGC
5' ss Score
7.1
3' ss Seq
TGTGTCCCCTTGCTCTGCAGGAG
3' ss Score
11
Exon sequences
Seq C1 exon
AGGACGAGGAGCTGGACAGCACAGAGCGGGCCTGTGATACTCTGCTTATGTGTATTGTCACCGTCATGAACCACGGACTGAGGAACGGTGGCGGCGTGGGCGACATCCTCCGCAAGCCCTCCAAAGAC
Seq A exon
GTAAGCACCATCCCACCCATTGGATGGATGCCCCCGTATCCAGCCGGTTTCTGGGGCACTGTCCAGAGCTGTCAGCTTCCTGCCCCCCAGCACACTGTAGATGCTACAAGGGTCACCACAGCAACCAGTCTTGGCTCTGAGGCTTGGGAAGGTGTGAGCCATCAGCAGTCAGTGGCTTCCTCAGCCCAGTGGGGAGGGCAGGGTGGAGCCTCAGGACTTGGACACAGGGCTGCAGGCTGCCCTGTTTTGTAGGACTTGTAAGGGCTTCCTCCTGGTCAGCCGTTTCCCAGTGTTAGCTCATGGCAATGACAGCGGGGGTCACGGTTGTCTGTGGGTTCCCATGTTCGCTCTCGGTTGGGGCTCGCGGTGACTCTGCCCTTGTGTGTCCCCTTGCTCTGCAG
Seq C2 exon
GAGTCGCTCTTCCCAGCCAGGGTGGTGTACGACCTCCTGTTCTTCTTCATTGTCATCATTATTGTCCTGAACCTCATCTTTGGGGTGATCATCGACACCTTCGCCGACCTGCGCAGCGAGAAGCAGAAGAAAGAGGAAATCCTCAAGACCACGTGCTTCATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.3=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(12.7=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGAGGAGCTGGACAG
R:
CACAGATGAAGCACGTGGTCT
Band lengths:
294-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]