GgaINT0141556 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4442608-4443150:-
Coord C1 exon
chr26:4442992-4443150
Coord A exon
chr26:4442774-4442991
Coord C2 exon
chr26:4442608-4442773
Length
218 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TTCCCTTTTGTCCATCACAGGAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTTTGTGCTTTTATTCTACCCTCTGGTGTTGTAGAAGCAGACACTGACCAGTGGGAACGAGCCTGTGACACGCTGCTCATGTGCATTGTCACTGTCCTGAACCACGGCCTGAGGAATGGAGGGGGTGTAGGGGACATTCTGCGCAAGCCGTCGAAGGAC
Seq A exon
GTGAGTGGGGTCCCTTCCTTCTGCCACTACAGAGCTGCCCTTCTTCCCTGGAAGTCCCTTCCAGCTCTTTCTCCTCACTGCCACTCTTCAGTGCTTTCCCCATCACACCCCTGTGACTGCTCCTCACCTTGTACCCTCAGCCTACAGTCCTTGCAGTGAGGCAGCGCAGATGGAAGGGAAGTTTGCAAGACACGTTTTTTCCCTTTTGTCCATCACAG
Seq C2 exon
GAGTCCTTGTTTCCTGCTCGGGTTGTCTACGACCTCCTCTTTTTCTTCATTGTCATTATCATTGTCCTGAACCTCATCTTTGGGGTCATTATTGACACCTTTGCTGATCTGAGGAGCGAGAAGCAAAAGAAAGAAGAAATACTGAAGACCACTTGTTTCATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(22.3=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(12.4=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTGGTGTTGTAGAAGCA
R:
CACATATGAAACAAGTGGTCTTCAGT
Band lengths:
308-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]