DreINT0090764 @ danRer10
Intron Retention
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48962763-48963890:+
Coord C1 exon
chr9:48962763-48962853
Coord A exon
chr9:48962854-48963822
Coord C2 exon
chr9:48963823-48963890
Length
969 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTTAGTGTTTCCCTCCTCAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
CCATTGAGGCCGAGGTGTCCATGCCGCTTGCATGCAGATGCATGAATGGAGGAACGTGCTTCACTGATGAAGGAGGCCTGCCCAAGTGCAA
Seq A exon
GTGAGTCTGAACGCTAGTCAAGAGCTGCTGTTCACGCTCTACAATTCCTTACAAGGATTATCCATAATGGGGAATCACATTTTTATTGGTTTTATGATATCTGCTCCATTAAGTTAAAATATTGGATGCATATATGGATGGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGAATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAAAGATAGAAATAAGGGGAGATAGATCGGGACATGGATGGATGGAAGGATGGATGGATGGATGAATGAATGGATGGATGAATGGATGGACAGATAAATAGAAGGGGAGATAGGTGGATAGATAGATGGAGGGATGGATAGCTGGATGGATGGATAAACAGAAAGAAGAGGAGATTAATGGATGGATGGAAAGATGGATGGATGGTCTTATAAATAAAAAATATAGAAAGAAGAAGAGATAGATGAGGAGATGGATGGATAGATGGATACATGGATGGATGGATAATAGAAAGAAGGGAAGATGGAAGAATGGATGGATGGATGGGTGGATGGATGGATGGATGGATAAAAAGATAGAAAAAGGGGGAGATAGATCGGGAGATGGGTGGATAGATAAATGGAGGGATGGATTAATAGAAGGAAGGGGGAATGGATGGATGGATGGATGGATAGACGGATGGATGAATGGATAAATAGAAAGTTAGAAAGAAGGGAAGATAGATAGATAGATCCAATGCTCTGTGAAATGCTCCGTGGTTTGTCCTTAATGCTTAGTGTTTCCCTCCTCAG
Seq C2 exon
GTGTCCGTACGGTTACTCTGGTAGTTACTGTGAAATGGGCAAGTCTAGAGGAGCTCCCGCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506:ENSDART00000167243:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]