GgaINT0046350 @ galGal4
Intron Retention
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18332996-18333672:+
Coord C1 exon
chr7:18332996-18333086
Coord A exon
chr7:18333087-18333604
Coord C2 exon
chr7:18333605-18333672
Length
518 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TGTTCTACTTATGTTTACAGATG
3' ss Score
8.91
Exon sequences
Seq C1 exon
CTATTGAATCCCCTCCCACAATGCCACCAGCATGCAGGTGCATGTATGGAGGAACGTGCTATATAGATGAAAGTGGTCTTCCAAAATGCAA
Seq A exon
GTGAGTAGGTTGTTACGGTAGTTTAGGATCAGATTATGTTCATTTAGTCATGCTCAGTCAATTCAAGGCTTTCAAATGTGCTGGAACTGCTTCAGTAAATATCATGCTTTGGCAATAGCATATTTGTAGTAATCACAGAAAAACATGTAAGTGTAAAAATATCAGTAAACAAGCAATGTGGAATTGCATCTGTTTGGGAAAAATGTCAGAAAGGCAAACCTCTATGAAGACTAGTAAAAGGTTGAGCTAAAAAACTTTAATGGAGAAGGCTCAGTAAATACAGCTTGAAACAGCCACTAGGTGTCACCAGTGTTCCAATGAAACTAAATCAGTGACTAGTGACTCTGTGTTCTCTGATTCAGCAGTTTTTATTTCCACTTTTTATTCTAAGCAGGCATATGTTTCAAAGATAATTATTAAGAGTTAATTTATGACAAGTGGACATTTATTAAAGAGTATAATAATGAAGCTGAGATTCTGTACTGAGTAAAAGTCAGCTGTTCTACTTATGTTTACAG
Seq C2 exon
ATGCTCTTATGGCTACACTGGAGATTATTGTGAAATAGGATTGTCAAAGGGAGTGCCTCCTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858:ENSGALT00000017651:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]