MmuINT0092643 @ mm10
Intron Retention
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69432183-69433092:-
Coord C1 exon
chr2:69433002-69433092
Coord A exon
chr2:69432251-69433001
Coord C2 exon
chr2:69432183-69432250
Length
751 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ACGTCTCCTTCTGATTCCAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
CCAGTGAACTCCCCATCACCATGCCTTCCCCATGCAGGTGCATGCACGGAGGAAGTTGCTATTTTGATGAGAATGACCTCCCCAAATGCAA
Seq A exon
GTAAGTGTGACTCTCGGTCCCAGCTGTTGACCTTGATCTTTAAGGGAACCTGAGATCTCAGTATAGCTGGGAAAAACAAGTACTAGAGGCTCATCCAATTCCCCATTTCCCATCTAACCAGCTTCTCCTCCTTTGGGGGAATCTGCGGGAGGCGAGGCATCACTTCCCAAATCATAACTGGCATAACCCTCACCTGAAGATCTGGCTCAAATGCCTATGTGCATTCTCAGGGGTACTGCATTTCTAACAACTCTTGGGAATGCTGTGGTCATGTTGAAGAGTGAGGAGTTAGAGAGAGGACAGCAGTATGTCTCCACATGCCACCACCCACCTCGCCTGGGAGGATGGCTTAGGATATGAGAGAGCAACTGACAGGAGAGATGCTTTAATACAAAGATCATGACTAGTCTGGGGTGAAGAAGCCTGAGGGAAACCATCATTGCAGAGCAAGATGAATTGTCTCTTCCTCCTTGAAAGTGGTTGGAGGATGGCACACTGCCACCGTGTCTGCACTCCCTTTCTAAGGAAGAAATGCATGGAGCAGAGGAGCCAGTAGGCTTATGCCATGAGACTGACCTAAGTACTACACCACTGCTAGTGGCTTTCTAGAATGAGTGCAGAATAAGCAGATGTGGAGCAGTCTGCACTGCCTGCTCCTCATGCATCAGGGCTGCATTGCCTGCTCCTTATGCAGCACTGGATCAGGGCTCTCTCTGCCTCCAAAGATAACCACGTCTCCTTCTGATTCCAG
Seq C2 exon
GTGTTCTAGCGGCTACAGTGGAGAGTACTGTGAGATTGGGCTCTCGAGAGGCATCCCTCCAGGGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070:ENSMUST00000080953:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types