DreINT0091847 @ danRer10
Intron Retention
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35492346-35495341:-
Coord C1 exon
chr19:35495015-35495341
Coord A exon
chr19:35492431-35495014
Coord C2 exon
chr19:35492346-35492430
Length
2584 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
CTACTACTGGTCCCCTACAGGCT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GCTCTCCAAGAGGAAGTCTCCTCTCGAGAGAATAATGTAGACCGTCTTGAGAGTCTCAGCCAATCGCTCCATCCGCTCAGCTGCGCAGCCGATCAGGATTGGCTGGGCGAGCGTGTGGGTGCAGTGCGCAGCGGGCACACAGAGCTGCGTGATTGGTGCGTTCGGAGAGAGGCCATGCTGGAGCAGGCGCTGGCCAATGCACAGCTGTTTGGAGAGGAAGAGGTGGAGGTCCTGAACTGGCTAGCTGAGGTGGCCCAGAGACTGGCTGAGGTCTCAGTGCAGAGTTATCAGCCGGAGCACCTAGAGCAGCAGCACAAACACACACTG
Seq A exon
GTATGATTCTGCAGGTTTTAGCAGCACAGGGTTAAAATATTTTCTGAGTCCTTTTGGAGATGATGAATACTGAGGGGGGAAAAGCAGAATAAAGAATAATACTAGGGCTGCCAGTGAGGTGACCACCGGGTTACTGTTTTTTTGCGGGTCAGAAGATGTTATTTTGCCGTACAATGGAGGGAGAGATACGTTTGACCACATAAACGCTAATATACACTACCTGACAAAAGTCTCGTCGCCTATCCAAGTTTTAGGAACAACAAATAATAACTTGACTTCTAGTTGATCATTTGGTATCAGAAGTGGCTAATGTGAAAGGCAAAGGCTTCTAGATTAGGCTTATTTTACCTAAATTAAAATATGATCATGTCTTGATTTTTAATTCTTTATTAGGACAGTAAGGTCTGACTTTGCTAAGACAAAAGTCTTAAGTCACTTAACAGAAATAATGTGCAGTATAGAATATAAAGTCATGGTGCTGTGGAAAAAAGAATTAATATTGTGTATGACTCCCATGAGCTGGGAGGACTGCTTCCATATATCTCTGCAATGACTCTAATAACTTAATATAGTCATCTGGAATGGCAAAGAAAGTTCATAGAGATTGTTTTGATTTATCTTCAATGCCTCCTCTATCTTACTCCAGACATGCTCAATAATGTTCAGATCTAGTGATTGGGCTGGCCAATGCTGGAGCACCTTGACCGTTTTTGCTTTCAGGAACTTTGATGTGGAGGCTGAAGTATGAGAAGGAGCGCTATCCTGCTGAAGATCTTACCATCACCTGTGGTTTGTAATGTAATGGGCAGCAAAGATGTCTTGATACCTCAGGCTGTTGATGTTACCATGCACTCTGCTGATCTCTCGCACTCACCCATACTGAATGTAACCCCATACCATAATTCGTCCTTCACCAAACTTGATTGAATTCTATGAGAATCTTGGATTTATGCGGGTTCCAATAGGTCTGCATTATTTGGGATAATTGGGATGCAGTTCAACAGATAATTCATCTGAAAGATCTACCTTTTGCCACTTTTCCAAATGATCAACTTGAAGTCAAGTTTTGTTATTTGTTGCTTTCACAACTGGGATCGATGACAAGACTTTTGCAAGGCAATGTACATTATTTGAACTTGCTGATTATGTTAGATCTGGCATCCTTGAGCAGGATGTTCTATTGGTCGGTGTAATTAATCACTATTAAAGGCACAGTATGTCATTTTTCCCACTAGAGTGTGTGTATTCACAACAATCAAAAATGTAGGTTGATGATGACGTGACTGAGTGTGGAATCATGGGAGTTGTCATCTTTATTACTCCTGCAGAAATCATGCTCATGGGTGTGCTAAAGTATTTAAAACTTCTAATTATAATGGTAGTATGAAGCAGAGTTAGACTGAAAGATATGGAAATCAAACGAGAGCGATGAAGTAATTACTGATGAGCGATGAGCATGATGCGGCACAAAAGCAGCAGAACCTTGACTATGTCACAGTCAACCGCTTCCTGTTTTCCTGGTCATGATGATGTGGTGAAGAAGAAAACTTAATTTATTTTAAGATTCTGTTATAGTTCTGTAAAGTTTCTAAAACGCACAGCATATTAAAGTGTCATAGATGTTTTTCTGTTTTCTATAAAATTAAACCAAATATTGAGGGTGAGCATGGCAACACAGGACTATGTCTGTGTCACTAGTTAAAATGGCTTATTTCTCTGGATTTCTTCGAAACATTTGAGATAATGTAAGTACACAAGTCAGCAAAATATATAATACTGTTCTAGCGGTTTATATACCGGTTTATAAGTATTGAACACATCAGTATTTTTCTCAGAAAACATCTTTCTTAAGATAATGTTGACCTGAAATTTTTACTGTATGTTGTTAACAACCAAAGAAGTCTATATATGCAAGAAAAACTAAACTAACTAGATTACAAAGTAATGTGCAATAAAATAAAAAAAATACAAGGAAAAAGTATTGAACACATGAAAAAAGGAAGGTGTAGAAAGGCTGTGAAAGCCCAGACAGCAGCTGAAATCTCTCAGTAGTTCTTCAGCAACTTTCAGTGAATTATTATTCGCTGCTTCAGTCCAGCATCTACATTATTAGGATGATGAACAGAACATCAGGCATTTCAGCCAGACAATGATCCAAAACAGAGCCAGGCAAACTCTCAAATGGTTTTAGAGGGAAAAAAATGAAGCTGCTCGAACTGCTTCTTACATATTGTGCCTTGATCCACACAGGTTCTTTTGCTCTGTCATCATCAGTGGTATGAAAACTGATTTACCGCTATAACTCAAATTTGTTGGCTGCGTTCATGGATATTTAAACACCAAAGGTTATTGTGGTGTGGTTATTTCAGAGAAAAGAATATCAAGACACTGACAAAAAATAAATGGCGGAGACAGTACAAAGCTCCCAATTTTGGGACAGTCTTGCAAAATGCGGGATTGGGTGGTCACCCTAGCCAATTGTTTTATTGTTTCATTTTATTCATTTCATCATTACATTTTAATTACGTTTAAATTCCTTTAAATTATTTCCAGAGCTAACGCTTCTACTACTGGTCCCCTACAG
Seq C2 exon
GCTCTTAATGAAGAGATTGTCAGCAGGAAGAAGACTGTGGACCAGGCCATTAAGAACGGACAGGCTCTGCTCAAACAAACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533:ENSDART00000146394:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(41.1=40.4)
A:
NA
C2:
PF0043516=Spectrin=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]