DreINT0094798 @ danRer10
Intron Retention
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14047423-14050677:+
Coord C1 exon
chr11:14047423-14047530
Coord A exon
chr11:14047531-14050507
Coord C2 exon
chr11:14050508-14050677
Length
2977 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
CCTCTTGTGTGGTTTGCTAGGTT
3' ss Score
8.58
Exon sequences
Seq C1 exon
ATCTCAGTCATATGATACACATCATTGACACTGATCACCCCTGGGATGTGTACTCCATCAATTCTGGTCACAATGAGATAATTTCCTGCCTAGAATGGGATCAGTCTG
Seq A exon
GTCAGTCATCATGATGATAAAGATGAAATGGGCTAAACATTTGGCAATATGTGCAGATCATATTTGACAAGTTTTTTTTAGAAGTAAAGTTTCCATTTATTTTAGGTGGGTAGTCTCAGTATTGTAAGGGTAAGCCTAATTTTACTCGATTAATGTACTGCGATGGTCTTAAATCAGTACAGATTAGATACAGAATAATAAAATCTAATATAATATTTATTTTTATTATAGATTTTTTGTAATAATATAATTATTTTATAATTGACATTTGAATCATTTTAGAGTGTTAAAAACATTTGAAGAGAGACGCGTTTCAATGTAAAACCTAAATACTTTTCCAAATCAGGGTTTTTACCATTATCAAATACTAAAACTATTTAAAAAATCTGATAATAAAGAAAAAACTTGTATTAAATGAAAATTACAAATGTTGCTTTAGCAAGTAACAGAACAGAAAAAATATATATAATTTATTAAAATAAAAGTAAATCAAAAAGGCAAATAAAAAAATTATACTTTATATTATAACAAATGAAAACAGTAGTGCAAATAATACAATTGCTAAATTTAATATGAAGCAAAAAAGCCAAATCAAAGTATGAAGAAAAATAATAATAAAAAAGGTATATTCATTTTTATTTAATATTCATAAAACATTTATTAATTAAGTTGTTTATAAAATCAGTTTTAGGGATACTCCTAATAACTGATTAACCCGTTAACTTAAAGCAGGGGTGCCCAAACTCAGTTCTGGAGAGCCGGTGTCCTGCAGATTTTAGTAGGGATGGCTGACGTGAAACTGACGTTTCGACACAGTTTCGAGATCCCGAAGCACAAGTGTTTCGAAACACTGCACCGAAGCATGATCCGAAACACCCAATTCACGTGACTAAAGTGTTTCAAAACACCTGGACACGTGACTAAAATGATTCAAAGCAACAATCAGTTAAGAAGTGTTTCGAGACCTTGCGAATCTGGATGTAACTGCCGGCGTCAGTTTCAAAATCTGTCTCATATGGCCTGGTGGACTGTGCCTGTACACGCTGTTTTTATACTTCCAATGACTTTTGGGTTTGAATCCCGACTTGTACAAATACACCTAAATCATGGTTTTATGTATTTTAATCATGTTTCTGTTTTATGGTGTAGCCTAAATAGATTAAAGCTGAGGATACGCCATCAATATAGCATCATTTTTGTAACACTAAAACAATAATAAATATTTTTACAGTACTGTGATGGTTGGGTTTAGGGTTTGGATAGACGTTAATGAAATACAATAAATGGGAAATTTAATAAATAATATAAATAATTCTTGATACCTTCTGGCCACAACTGTGTCTGATCTAGCAACAACTCTGTTTTAATACCAAAACAAGACATATTTATTTACAAAGTGTTTATTCGGATGTCAGACCAATGTTGAAACAAAACGAAACAAGAACAAAGCATTACCAACTGGTATTAAAGCATTTCAAAAAAGCCGTATCAGCCTGGATTCAAACTCAATATCCCCACATGGAAGTCAGAAACCTTAACCGCTCCACTAAATCTCTTGAATAGATACTTTTACAAAGTGGGGTGTAATACCTCAATTTGCTAAAATGTTCTTGCTGAAGCTGTTTCAGTGCAATACATAAAAATGACCACTAGGTGGTCACCGTAGAGTGGGGTTTCAAAACATTTCGAAGCTTCGACACATTTGCTTCGACTGTTTGTTTCAGTGTTTCATGAAGCCTCGCTTTGCCCACCACTAGATTTTAGCTCCAACTTGCCTCAACACACCTGCATAGATGTTTATAGAAAGCCTTTAAAAAGCTTGATTAGATAGCCCAGGTGTGTCTGATTGGGTTGGAACTAAACTTTGCAGGACACCGGCCCTCCAGGATAGAGTTTGGGCATCCCTGTCTTAAAAGGTGCATTTTAATCTATTATTGGTATCAGTTAAATGATTAAAAATGTATTGTTTTTATTTTATTTAAGTTTGGCTGCATAAATGTGCAACACATATTTGCTTATTCGTGAGACAGTAACATGTGCAACTACATGTGCCCACAGACATATTTTGCCAAAAAAGCAAAATGAAAGAAGGATGATGCTGGTCACAGTTTGACACAGACAAGTCGATGCCAAAGCAGCACTGATGCTGATTGCTAAAAAATGTAGCGGAGCATTAATTAAATGCGGTTGTTATTATGTTTGCATGTTAAAATAAATCAGTATTTTAAAATGCAATATTAAATGTGTCGGACACAAAATAGACACGTCAATTGCTTTGTTTTAAATTAAATAGTAGTTTAATATTAATCTGACCAGTTAGCAGTTAATATTCAGTTAATGAGTGGCAGATTTCGATTGGCAAAATTAACCGAAATGAGCATCCCTAATCAATGTATTTGTTCAAATAAGTCAATAATGTTTGCCTCTTGTTAGGGTTGGGCCGATAGTCGATGCCATCGTCCATCTTCGATGGCCAATAGACAACACAATGCTGAGCTTGCATCGCTGATCCTCCGCCCCATCACAAACCCTCACGCAAAAAATACACACTCAGGCCCCGTTTGCACAAAGACGTCTTAGTGTAAAGATGGCATTTTAGAACGAAATGATCCACATCTCCATCGTGTTTTACCTAGCATTTCTGAACAGCCCTCCGTCCGCTGAAAACGCACATCACGTGACCACACACAAACACACACATACAGACAGAAACAGACAGACATTCACAGACGCAAGTGGTGCTCACTTCAGAGCCACACACTGTCATGCGCTCCTCTGAGTTCCAGAGACAGAGAGTCGTGCATGTTTGACAGTTTATCAAGGGTGTACCACTGGATTGCGTCTCATTATAGTTGTTAAACTTGATATTCAGACATACCGTCATATGCCATCGTCCATCGCGATGGTTTACATTAGACATTGTATGATGCCAAATTGGTCGACATTGCTCAACCCTACCTCTTGTGTGGTTTGCTAG
Seq C2 exon
GTTCGAGGTTGTTGTCTGCTGATGGTGATGGTCAGATCAAGTGTTGGGGCATGACAGAGCACCTGGTGAACAGCTGGGAGTGCGCACAGAGCAGCTCAGTGGACGGAGACCCTATTGTAGCACTTTCATGGTTACACAATGGAGTCAAACTCGCCCTGCATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779:ENSDART00000059752:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(56.4=59.5)
A:
NA
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]