MmuINT0097395 @ mm10
Intron Retention
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79906765-79907146:-
Coord C1 exon
chr10:79907039-79907146
Coord A exon
chr10:79906935-79907038
Coord C2 exon
chr10:79906765-79906934
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACACAGCTCTCTGGTCGCAGGGT
3' ss Score
5.47
Exon sequences
Seq C1 exon
ATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAG
Seq A exon
GTGAGGCCAGGGGGTGTGCTCTCAGTCCAGAGCCTGGCGACAGCCACCACCCGCTGGGAGTCCAGAGTGGGGGGAAGGCCCCTGACACAGCTCTCTGGTCGCAG
Seq C2 exon
GGTCCCGGCTACTGTCTGCTGATGCTGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGCTGGCCCTGCATGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833:ENSMUST00000105378:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(56.4=59.5)
A:
NA
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(11.6=52.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGACACGGAACACCCC
R:
ATGCAGGGCCAGCTTTACAC
Band lengths:
249-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types