RnoINT0091117 @ rn6
Intron Retention
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12621216-12621678:+
Coord C1 exon
chr7:12621216-12621323
Coord A exon
chr7:12621324-12621508
Coord C2 exon
chr7:12621509-12621678
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACACAGCTCTTTCATCACAGGGT
3' ss Score
5.33
Exon sequences
Seq C1 exon
ACCTCACACACATGATTCATATCCTTGACACAGAACATCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGTGAGGCCATCACCTGCCTGGAATGGGACCAGTCAG
Seq A exon
GTGAGGCCATGAGGTTTGCTCTCAATCCAAAGCCCAGGACAGCATATGCCACCTTCCTCAGTCATCAGTCCTAAGTCTGGAGCCTGGGGACAGCCACTGCCCACTGGGAGTCCAGAGTGGGGAGGGGACACCGAGCAGTTTACCTGCCCATCAGAAGGGCTCCTGACACAGCTCTTTCATCACAG
Seq C2 exon
GGTCCCGGCTCCTGTCTGCCGATGCTGACGGGCAGATCAAATGTTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTCCGTGGGCAGCCAGGTGGAAGGGGACCCCATCGTGGCTCTGTCCTGGCTGCATAACGGGGTGAAACTGGCACTGCACGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315:ENSRNOT00000015257:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(56.4=59.5)
A:
NA
C2:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACATCCCTGGGAAGTGC
R:
CTTCTCTACGTGCAGTGCCAG
Band lengths:
248-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]