DreINT0095034 @ danRer10
Intron Retention
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21201607-21208719:-
Coord C1 exon
chr23:21208591-21208719
Coord A exon
chr23:21201736-21208590
Coord C2 exon
chr23:21201607-21201735
Length
6855 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
ATCTGTCTCTCTGTTTGCAGCAT
3' ss Score
10.8
Exon sequences
Seq C1 exon
AATGTGAAGCGGGCCGTTATGGACCCAACTGTGAGCAGGAATGCCAGTGTCTGAATAACGGTGTATGTAAAAGCAGCACTGGCACCTGCAGCTGCCCACCGGGATTCATCGGACCAAACTGCAACATCA
Seq A exon
GTGAGTCACACTTGCACACTTTTCATTCATTATAGTAAAACAATGCCAGTACAGTGTTTCTAAAATGGACAGCTCACACAAAAATTAAAATAGGATATCCAAGATGCATAGGTATCCTTCTTTGAACATTAAAGAATTTTTAATTTGTCACCTCTGAAATCTAATCTAATCCTCACACGCATTAGTGTCCCACCAGTGCTGATTTACAGCCTTATTGCTCTGCTATGCGTGTAATATTGCGTTTATACAACAATTCGATGGCATAATCGTATATATTTAAAAGAAAATCAAACACAGAGTCTAAAAATCCTTTTGTATGAGGAACTACTTTCTTCTGGCATTTATTTACATTAGCTCTAAAGTCATGTTGGTGAATTAGTAACTGATTCTGCTGTTCTGACTTCATCTGCTAGTGTTTGAATGATTCTCTAGAGTAATGTCTACAGTGATGATAAAACAGCTGATTTTGCTGACATTTTAAGATTATAAGGCTGAACGTCTACAGAGATATCTCCTTTCAGTCTACAATATTTTTCTGTTGCAATCAGGATATCACAATAATCAATCCAGAGAAAAGCAGTGCAATAACTACCAGATTGCTGTTGTGTTTGCGATAAGGAAAAACACTAAACACATGCAGGCATTTCTTCTTTCTTTCTGCCAACACAACATGCATTCCTGATATGCGAGTCCCATTTCAATATATTAATATTATATGGTATAAATACAGCTCTACAACGTACAAAAGAGAGAGATCGACATAGAATATCTCACCAGTTTAATAATTAAATAAAATTTTATTATTAATAAAATTTGATCATCTGTTGTTAGAAATTACGCTGTTTAAATCTTCTAAGGGCTTATTATGCAGCCTCTGTTGCCATCTTGTGGATGAACAACATCAACTGTCTTTGATCAAAGACAGGCTAATGGCCGCCGATGTGCTGTCTCTCAGAAAATATCAATATTTTAAAATAGGCACTATCCTTATAATGAACTGCATAGTTGCAATCTAAATAACTACACTATCCAATAAAAAAGCCTCAAAAGTACATTATGTTGCCCAACAGCTGTAATAATTGTCAAACTGTAGCTTGTACTCAGCTTGTTGTTGTATGTGTGAGTAATACACAAGGGTAAAGTGCTGGTCTAGTGCTGTTACTGTCAGAGACTGGGATAGAACCCGGGTCTCCTGCACGAGATGTTGGCCTTGAACCCACTGAGCCACACAGGCGTTGAAGAACCAAAGTCACAAAAAGGAACTTTCTCCTTAAGAGGAATTTATTAGTGGCAAAAAAAAACTTCAATAGAAGATAAAGATAGAGCAGACAAAAAACAAAGACTTCTCCAATTTCAAAAAATGCAAAAAACTCAAGAGGCAAAAAACTCAGGATCAGTAACTGCTCAAAATTACTACAAAAAACATAAGTCACAAAAAGCTTGACAAAAGGTAATTTTTCAAATAGAGGAACTCACAGAGGATGACAGGCTAGGATCCACAATAACCGAGCAAAGAACTACTAAACTGAGGCTATTTAAATACAAACAGCTAAACAAGGAACATGTGAAATCAATAGCTGTGATTACAAATACAAAATAAAGACAAAGAACGAAATGAGGACATCTAGTGGTGAAGAAAAAACATTACAAGAAAAAACTAAAATAACATGGGCAAAATCCTGACAGGACCCCCCCCCTAGGAACGGCTCCTGACGTTCTTGCCGAGAGACTTGAGCTTGAGAGTGTGAAAGTCTCGAATCAACTTAGGATCCAAAATGTCCTTGGCAGGAACCCAGGAACGCTCCTCAGGGCCGTAGCCTTCCCAGTCCACAAGATACTGCTTGGTCCGACGCACTTGACGAACATCCAGTATCCGGTGGACTGTGTAGACTGGTTGGCCTCCAAATAACCGAGGAGGGGGAGGTTTACCTGTCACAGAAAAAGGAGAGGATGAGACTGGTTTTAGTAGCGATACATGAAAGGTAGGGTTTATTTTTAATGATTTTGGTAGATATAACTTGTAAGTGACCGGGTTTACTTTCCTTGCTATCTTGAAGGGTCCTATGAACTTCTGGGAGAGTTTTCTAGAATCCACTCGTAGGGGAATATTTCTAGTTGAGAGCCAGACTCTTTGGCCCGGGCGCATAGTGGGGGTTGGTCTGCGTCTACGATTAGCCTGTTGCTGGTATTGTTGGGATACGCGGAGAAGCTTAAGACGTGCCTTCCTCCACGTTTGACGGCAGCGTCTGACAAACTGGAGGGCTGAGGGGACGGTCACTTCTACCTCCTGCTCCGGGAATAGTGGAGGAGAATAGCCAAATTGGCATTCGAAAGGGGACATACCAGTAGCTGAAGAACAGAGAGTATTATGTGCATATTCTGCCCATATAATGAAACGGGACCAGGTGGTGGGATTATTGGCTGCCATGCATCTCAGGGTGGTCTCAAGGTCTTGATTGAGTCTTTCGGTTTGACCATTGGACTCTGGGTGAAAACCTGAGGATAGGCTGGCCGTAGCCCCTATGGACTGGCAAAAAGCTTGCCAGAATCGGGAGGAAAATTGAGGTCCTCGGTCTGAGACAATGTCTTGGGGAATGCCAAAGACTCGGAACACGTGATTTATGGTAAGCTCGGCTGTCTCTTTGGCAGTGGGAAGTTTGGGCAAGGGAATGAATCGTGCAGCTTTGGAAAATCGGTCCACAATTACCAAAATAGTGGTATTCCCTTGGGATGGAGGGAGCCCCGTGACGAAATCCATAGAAATGTGCGACCAGGGTCTGTGAGGTATGGAAAGTGGATGCAGGAAACCTTGGGGTGAACAGTGGGAACTTTTTCTCTGGTTGCAAGTATGACATGCATTGACGTACAAGGTCACATCTTTCTTGATGGTGGGCCACCAAAACCGTCTCTGCAAAAACTCAAGAGTGCGAGCAGACCCTGGATGACACGTGAGCTGGGAAGAATGTCCCCACTGGAGAACCTTGGATCGAGCAGCTTTGGGGACGTACAGACAGCCAGCAGGACCTCCTCCTGGGTCAGGGTCTTTGATTTGGGCTTTCCTAACAATACCCTCCAGACTCCACCTGATGGGGGCAATAATCTTTGAACTGGGGATGATAGGTTTATTGCGGTCTTCTTGAGGGGATTTTACATATACTCGGGACAATGCATCTGGTTTCAGATTTTTGGAACCCGGACGGTAGGTGAGGGTGAAATGAAACCGGTTGAAGAACAGAGACCATCGGGCTTGGCGGGGATTGAGTCGCTTAGCCTGCTGCACATACTCAAGATTTTTGTGGTCTGTCAGTACTTGGAATTGGTGTTTGGATCCCTCCAGCCAGTGTCTCCATTCCTCAAGTGCTAGCTTCACTGCCAGTAGTTCCCTGTCACCCACGTGATAGTTTCTCTCGGTTGGGGTGAGACGATGGGAGAGAAAAGCACAAGGGTGAAGTTTGTTATCCTCACCTCTCTGGGATAACACCGCTCCAATGCCCACTTCGGAAGCATCAACTTCAACCGTGAAAGGTTTGTCAGGGTTTGGGATAAGGAGGATAGGTGCCGATGTAAAGCGCTTCTTGAGTTCATTGAACGCCTTCTCAGCTTCAGGCCCCCACCGGAACCCAGCAACTTTCTCTTTGGTGAGGGCAGATAATGGGGCCACCACAGTGCTAAAATTTAGGATGAATTTTCTATAAAAATTAGCAAAGCCCAGGAAACGCTGCACTTCCTTGACTGATGAAGGGGAAGGCCAGTCCGCCATAGCTTGAACCTTTTGTGGATCCATTTGGATCTGCCCTGGTTGGATGACAAAACCAAGGAATTTGACTTGGGATACGTGGAACTGGCATTTCTCTGGTTTAACATACAGGTGGTTTTCGAGAAGTCGATGGAGGACTTTGCGGACATGATGTACGTGTTCTTGGAGTGAGCTCGAGAAGATGAGGATGTCATCCAAGTAGACGAATACAAACTTGTTCAACATGTCTCGGAGAACATCATTAATGAGGGCTTGAAAAACAGCGGGGGCATTGGTGAGACCGAAGGGCATCACTAGGTATTCGTAGTGGCCAGTAGGTGTGTTGAAAGCAGTCTTCCACTCATCTCCTCGTTTGATGCGCACTAGGTGGTAAGCATTGCGCAGATCAAGCTTAGTGAAAATTGAGGCTTCTTGTAAGATCTCAAAAGCAGTAGACATCAATGGCAGGGGATAACGGTTGCGGATGGTAATTTTATTTAGCCCCCTGTAATCTATGCATGGCCTAAGACCGCCGTCCTTCTTTCCAACAAAGAAAAAACCAGCGCCTGCTGGAGAGGTGGAAGGCCGGATTATACCTGCTGCGAGGGATTCCTCAATATAGTCATCCATGGCAGTGCGCTCAGGAAGGGACAAGGAAAAAATACTGCCTCTAGGGGGGCAGGAATCCGGAAGCAGCTCAATGGCACAATCATAGGGACGATGAGGCGGTAAGGAGGTAGCTCTCTTTTTGCTGAAGACAGTTTTAAGGTGGTGGTACTGGGCTGGAACTTGAGACAGATCTAAGGGCTCTCGAGACTCGAAAATGGGTTTCAGGGGTTTCTGACTCAAACAAGTGGCTTGGCAGGTGGGACTCCAAGCCAGGATGGTTCCAGTAACCCAATCAATGTGCGGGTTGTGTTGAAGCAGCCAGGGGTGTCCAAGGATAACTGGGAATTCAGGTGATTGTATGAGGTGGAAACAGAGCTTCTCATGATGCTGGTGAATGGAAAGGGACAGGTCAGAAGTAAGATGAGTTACCTCACCCGGACCTAATGGTCTGCCATCCAAAGCTGTGACTGACAGTGGTTCTGGAAGGGGATCATTGGGAATATTGAGGTTCTTGGCTAGAGTGATGTCCATGAAATTTCCCGCGGCACCAGAATCAATGAAGGCTTGGAGTTGGGAATGTTGGTCTGCCCAAGTGAGAGTGACAGGAAGGAACAAACCACTTTTGGAAGGTGATGAACTGTATGTAACTCCCGTTACAGTCCTTCCTTGCCTGTACGGGATGGAGCGTTTCCCGAGAGCTGAGGGCAGGTGGAGCGAAAATGACCTGATAAGCCACAGTAAAGGCAGCGCCGCTCCCTCATGCGGCGGTCTCTCTCAGTAGAAGAAAGGCGAGTCCGGCCTAACTGCATTGGTTCAGAATAATCTTGATGGGCCAGTAATGTGGATGATGGAATTGAAGTGAGCATCTCAGTGGAAGCCGTGGAGCGCTCTAGACGTCTCTCCCTCAGTCGGTTGTCTAGTCGAATGGCTTGATCAATTAGAATCTCGAGATTTTGGGCAGGTTCCCTAGTAGCCAAGTCATCTTGAATAATCTCGGATAACCCATTTCGAAAACAGACCATGAGAGCTTCCTCGTTCCAGCCGCTCCCTGCTGCCACTGTACGAAATTGTATGGCATATTCTGCCACACTTCCAGTCTCCTGCCGAAGTATGAGGAGTCTTTTAGAGGCTTGTCGGCCACTGAGAGGGTGGTCAAAGACTCGCTTAAACTCCTGTTCAAAAGCAGTGTAACTTGAACAGAAGGGGGCTTTGGCCTTCCAAACTGCGGTAGCCCAGGAGAGAGCCTTACCGGATAACAGAGTGATCACATATGCGATTCGTGCCCGATCTGATGGGAAGGATGATGGCTGCAATTCAAAGGTAAGAGAGCACTGGGTTAGAAAACCATCACATGCATTGGGATCACCTGAGAAATGTTGTGGTGGCGGTAGGCGAGGTTCCATCATAGGAGAGGGTACTCGAGATTCTGACAAGGGTACTGAGGTGGCGGTGGATGCCGGATTAGAACAGGTAGGTAATCTGTCAAAAAGTTGACGAACAGTAGTCATAAGTTCAGAGAGTACCTGTGAATGTTTGGCCATCAAAGCCTCTTGCTGAACTAGGACATTCTCATGTCGTTGAACTGTAGACTCGTGCTGAGCCACTGTGGTAAGGAGCTCCTGGGAACTGGGGTTTTCGGGGTTCATGATGTTGGCTCGGTTATTCTGTCAGAGACTGGGATAGAACCCGGGTCTCCTGCACGAGATGTTGGCCTTGAACCCACTGAGCCACACAGGCGTTGAAGAACCAAAGTCACAAAAAGGAACTTTCTCCTTAAGAGGAATTTATTAGTGGCAAAAAAAAACTTCAATAGAAGATAAAGATAGAGCAGACAAAAAACAAAGACTTCTCCAATTTCAAAAAATGCAAAAAAACTCAAGAGGCAAAAAACTCAGGATCAGTAACTGCTCAAAATTACTACAAAAAACATAAGTCACAAAAAGCTTGACAAAAGGTAATTTTTCAAATAGAGGAACTCACAGAGGATGACAGGCTAGGATCCACAATAACCGAGCAAAGAACTACTAAACTGAGACTACTTAAATACAAACAGCTAAACAAGGAACATGTGAAATCAATAGCTGTGATTACAAATACAAAATAAAGACAAAGAACGAAATGAGGACATCTAGTGGTGAAGAAAAAACATTACAAGAAAAAACTAAAATAACATGGGCAAAATCCTGACAGTTACAGGCAGAATATCGCACAACTATCAGCCAGTCAGATTCAAGAACCAGAGAGAACTGTTGTATAAAAGTTATTATATAACTCTTTTTTAAATATTTTTTAAGCAAGATGATAATGGTCTAATCCGATACAATGATTTATGCTAAGCTAAGCTAAAAGAGCTCCCACCAGACACAGATATCAGGCTAAATGCTCTCAAAAATGGTTAAACTCAACTGTTTTACTCTCAGTTGCTCAAAAATTTAGCCTATTTGCCAAAAAAGTGGAGTGTCTCTTTAAGAAAGTGGGGTGTAATGCGTCATCTGTCTCTCTGTTTGCAG
Seq C2 exon
CATGTCCATTAGGGCGTTATGGTCAGGACTGTGCTGGAGTGTCTCTGTGTGGTGAAGGGGCTCGCAGTGACCCTCTCACAGGCAGATGTGTGTGCAGGGCTGGTCAGCGTGGACGGGACTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199:ENSDART00000143206:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(30.8=36.4),PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]