DreINT0095419 @ danRer10
Intron Retention
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3553091-3555703:+
Coord C1 exon
chr9:3553091-3553140
Coord A exon
chr9:3553141-3555642
Coord C2 exon
chr9:3555643-3555703
Length
2502 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTTTGTTTAATATTTCAGAGG
3' ss Score
7.67
Exon sequences
Seq C1 exon
GTGGGCTGTGGTGCAGGTAACAGCGTGTTTCCCATCATCAACACCATCAG
Seq A exon
GTAAGACCACTTTATTTTGAAAGTGAAAGTCGTGACCCATTCTCTAAGCCCATACTCTTGCTCAAGGGACTGAAGTCGGAAAATTTCCGAAGCGTTTTTTGGTACTCAGATCTGAAAAAAGAATCATGCACAGAGACTTTGCACACTGAGGACCCGATCATACACCCGGTGCAGAAGTGTAAAGCGTAATGTGTTGCTTTTTTCAGACCAACGCAAGGCTAATTTTTTGTTTTGCACGACGTTGTTTAAATAGTACATCCATTTGCGCCGCTTTGAGGAGTCATGGATGTTCCGGTCTAGAAAAGAGGTGTGTTAAAGCTAAAATGAATTAACTATTATATAATATTTGTACGAATAATATTTGTACGATTATTAAAGTTCGTCAAGACAAACTTTGAGACTAGCTTGAGAAAGGCTGTTGGTAGGAGTTTATTTAAAAGTATAGATAGATAGATGCTTTTAAGATGGCGTTCTAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACGTCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCTAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACGTCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCTAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCTAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGGTCATGATTCGTTATGTTTGTGAATTACGTCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGTGAATTACGTCTTTTGACGCGCCGTGCACATGAATGCTATGCTTTTAGGATGGCGTTCTCATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACGTCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCTAATGCGCTACTTTTCCATTGTTTTTCCATGTAAATGCACTTGATGGACGTTCATGATTTGTTATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTTATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGGTCATGATTCGTTATGTTTGTGAATTACGTCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAATGCACTTGATGGACGTTCATGATTCGTAATGTTTGCGAATTACATCTTTTGAAGCGCCGCGCACATGAATGCTATGCTTTTAAGATGGCGTTCAAATGCGCTACTTTTCCATTGTTTTTTCTATGTAAACGCACTTGTTGTACATACACAATTGTTATGCTCGTGAATTACAGTTTTTTTTTTAGATTTACCATTCAATCCACGTTCCTACTCTCACCTATCGTTATGAGCTTTGGGTACTGTACTAGCTTTCTTTTTTTGTTTTTTCATGAATGCTTAATTGAAACAAATTCATACACTTAATTTAATGATCATCAACAGGTTTTCAGTGTTTTGAGGCACAATGAGCTGATTCTGACTTCCACTAACCTCTGATATGGCTATTTCAACAGACGTGATTCTCAAAGACAACCCTAATATTAATATTCTGTGTATATATACTGCTGTAATAAGTGGCTGACAGTACATACATCCCACAATACATATTAAATTCTCAAATAATGAAAGAAATCATAAATGTGTAATAGAAACACTAACAGAAAGTAGCAGGTAAGCAGCCATATTTGTGTTTTGTTTAATATTTCAG
Seq C2 exon
AGGCAGTAAGGCGTTTCTGTACTGCTGTGACTTCTCATCTCGAGCGATTGAGCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359:ENSDART00000008606:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(6.8=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]