GgaINT0045325 @ galGal3
Intron Retention
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19506024-19508513:+
Coord C1 exon
chr7:19506024-19506073
Coord A exon
chr7:19506074-19508449
Coord C2 exon
chr7:19508450-19508513
Length
2376 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
ATGGTGGTTTGTTTTTCTAGCAA
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGCTGGAAATAGTGTATTTCCTATTTTGAAAGTTCTGTG
Seq A exon
GTATGTAGTGCTTTATTTTCAAATATGAAAGTTCTGTTTTTCTCCATTTTCTTCAAATGTTGGTACTGGGCTGGTGTGGCAGGAAGTGTTGACTACACTGCTTTACAGCCCTGAAATTCTTAGTGCATGGAGACCACAGGCAATGTTGCTAACATCAGTAGAAGATACCCCTCGCACTGCTCAGCCCCTAGTCTTGAGGGTGTCATATCTGTTGACAAGTTTTTCTGTTCAGGAGCATTCAGGCTGACTTATTGTAGATAATCACAGACAAGTTAAATATCCTTCTGTACTTTATCTTATATGTTACTTGTATGTTACTTTAAAGATACCTGATATTGCTTTAAAGAGCCAAAATCAGGCAGTAAATAATGATTTGGTTTTCTGGTGATAAGTTCTGTTATTGTTTTTTTTAATTTGGTTGACATGCTTTATCAAATTGCTTCAAGTTTTAGTGGTAAGGAAGGCACAAGTCCTGTACTATAGTACTTAATTCCCTGAAATGTTTAAAGCACTTAGCTTCTGGTTTTAGAAAGTACTGTTATGACAGCATGTCCTCCCTTCCATGCATGCAGGAAGGTTTTATTGGGAAGGCTGGATATATATCATGGATTGAAATAGATTTCTTTTTATTCTTGCCTCCAGGAGGTCATGTACAGCATAGTTCATTATTCTGTAAATGAATTCTGATTGCTAGCAACACAACAGTGCAAAAATCCTCCATTTTGCAGGGATGGAAACAGAGAGCAGAAGGAATGAAGCGATACTCTGGGATCATAAATGAAACCCAATAGTGTCAGTAATGCATTTTCATTCCAGAACAAACACTTTGCCGTAGAGACCATAGTCTGAAAGGGAAGCCCTGTATCATATGAGTATCTGTATTAAAAAAAAATGAGACCAACTTTTGTGTTTTTCTCACAGGAGGCATTAGTCATAGGTTGGCATTTCTGACTGTTAATTAATCCTGGAGATCTCTATTCTTATCCAAATCCTCAGTCATCCAGATTGGTTGGTACACTGAACAACTTACACATTTATCTTGTGTATTACCTGATGGAAATATTTTGCCTCTTAGCAAGTTTGGCTTTAAAGCACAGTTGATTTTTTTGAATTTAATAATATAAAAATTGTCTTTTGTATAAATAATAAAAGCTGAAGTCAAGTATGTACCTTAGCTACAAAAATATTCCATTTAAGTTTGTAACGTAACTTTTATGCAGCTTTTTCATGCTCCCATAAAAGTTAAGCTGCTTTTTAATACAAAGCAACATGAAATAGCCATCCACATTGACCTGTGTCTTTGCCTTTTTACACAGCTACTATTCTGCTTTCTAAAAAGTAATATGAAAGTACTAACATTTTAGCAAGTCAATATGTCAATTAGGTAATTAACTTCACCTTTGTCAAGGGACTGTCTGGGTCCAAAGCCTGGCTGCTTGTCCTTATCCATGATAAATACCTTAACTTACCAAATGTCAATGTGATTTCAGAGCTCATACAAGTTCTGTTCTGCAACAGAGAATATATTTGGTCCGTAAGGTTTCTCCTGAAGGGGTTTCAAACAGAGATCACTAATTCCCTTTCTAAAGAAACAGTCTGTCCAAAATCTCAAATAATTTTTAGGAGAGATAAATTGGTCATGAGTTGATTATGAGATAATAGGTTTAGTGGGGAGGCTTTACTCCATTAGTTCTAAATGAGTTTTTTGGAGGCGGGAAAAAAAAATCTCCCTGAAGTTACTAGTATCTGTTGAGTGGTACAAGGAAATTTGCAGCTCGCTTAGTTGTGGATGGGAAGGGAGGGCAAAACAATTCTACAGGAAATTCTTATTCATCTTTGCTTACAAAACAAATTGGATAATGGAAGGAAACAATCAATACAATTTAATTGAATCTAAACCATAGCAAGGTGGCATATGGGAACCCAAACATCTACAGAACTGTGGATGACTTTTGCAAACCTATCCCCCTCAAAATCATATTACCAATTAGACTGCATAAATGAGTTAATGATAAAGACTTAGTCCAATGCTTTTTGGAAGAAAATGTGACCTATTATGTGCCTTTTATGTAATATAACACCAGGATGTTGTGTTCACTCCTGGCAGCCCTCTCTGACCTTCTTTCTTTTCCTTTTCGCTTTCTAGCCCTGACAAGGCTGTAATCCTCCTTTTTATACTAACTCTGTTGGTATTCTTATGAATTTATTGGCCCAATTGGCTCATTACAACCTATACAGCTTTCCGTGTCCATCAAGGCGTGCTTAATCAAACCAATGGAAAGTCCCAAAGGGCCCTCTGTAGTTCCAAGAACACTGATGTAGACTTTCATCTTTTACAATAATAATTTTTCAACTGATGGTGGTTTGTTTTTCTAG
Seq C2 exon
CAATACACCTGGAACCTTTCTGTACTGTTGTGATTTTGCTTCAGGAGCAGTGGAGCTCGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564:ENSGALT00000015575:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.5=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]