DreINT0098366 @ danRer10
Intron Retention
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17680927-17681229:+
Coord C1 exon
chr7:17680927-17681029
Coord A exon
chr7:17681030-17681129
Coord C2 exon
chr7:17681130-17681229
Length
100 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TCATTTCATTTCTATTTTAGGGC
3' ss Score
11.24
Exon sequences
Seq C1 exon
TTGAAGCAGACAGTCGCGTTCAGGAGAAGCTTGAGACAAAGGTCTGGGATCCAAACAACCAGCTGAAGGATCCACAGATAGACCAATTCCTGGTAGTGGCACG
Seq A exon
GTGAGTATTTCTCCGTTCGATTAGCCATTTGTGCTTCATTAAAAAGCCACTGTTCTGTAGAATGATGTTAATTCTAGTCATCATTTCATTTCTATTTTAG
Seq C2 exon
GGCTGTTGGAACATTTGCACGTGCACTAGACTGCAGCAGTTCCATCCGCCAGCCTAGTCTGCACATGAGCGCAGCGGCAGCATCTAGAGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031:ENSDART00000147564:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGCAGACAGTCGCGTTC
R:
AGTGTGATGTCTCTAGATGCTGC
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]