MmuINT0101446 @ mm9
Intron Retention
Gene
ENSMUSG00000071646 | Mta2
Description
metastasis-associated gene family, member 2 [Source:MGI Symbol;Acc:MGI:1346340]
Coordinates
chr19:9021138-9021626:+
Coord C1 exon
chr19:9021138-9021240
Coord A exon
chr19:9021241-9021526
Coord C2 exon
chr19:9021527-9021626
Length
286 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
ACTTCTCAATCTCTCTTTAGAGC
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG
Seq A exon
GTGAGGGTGGGTGGATCAGGAAGGTGGGCTGGGGAGGAATGGACTGAGTTCTGCGTCTCATCCAATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTTTTTTTTTTTTTAAAGTGGGCTTTGTTTTAGGCCTGGGCATTTTCTTTTTCTAATTAGTTCCTGAACCTGCTTGAATTTTGAAGGGGAGAACCCTTCTTGACTTCTCAATCTCTCTTTAG
Seq C2 exon
AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071646-Mta2:NM_011842:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.200 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCAGATAATCGAAACCAACAGA
R:
CAGCAGCTGCACTCATGTG
Band lengths:
182-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: