RnoINT0094986 @ rn6
Intron Retention
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225145187-225145572:+
Coord C1 exon
chr1:225145187-225145289
Coord A exon
chr1:225145290-225145472
Coord C2 exon
chr1:225145473-225145572
Length
183 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
ACTTCTCAATCTCTTCTTAGAGC
3' ss Score
9.19
Exon sequences
Seq C1 exon
GAGAATCGGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATCGATCAGTTTCTCGTGGTGGCCCG
Seq A exon
GTGAGGGTGGGTGGATCAGAAAGGTGGGCTGGGGAGGAATGGACTGAGTTCTGAGTCTCATCCATTTTTATTTTTTTCAAAGTGGGCTTTGTTTTAGACCTGGGCATTTTTCTTTTTTCTCTTTAGTTCCTGAACCTGCTTGAACTTTTCTCCTCCCTTCTTGACTTCTCAATCTCTTCTTAG
Seq C2 exon
AGCCGTGGGAACCTTTGCCAGAGCCCTAGACTGCAGCAGCTCAATCCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913:ENSRNOT00000027141:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=FE(61.8=100)
A:
NA
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATAATCGAAACCAACAGA
R:
CAGCAGCTGCACTCATGTG
Band lengths:
178-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]