DreINT0098382 @ danRer10
Intron Retention
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25163502-25167958:+
Coord C1 exon
chr12:25163502-25163690
Coord A exon
chr12:25163691-25167883
Coord C2 exon
chr12:25167884-25167958
Length
4193 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
AATGACCTGCTTTATTTCAGCTT
3' ss Score
7.45
Exon sequences
Seq C1 exon
TTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTT
Seq A exon
GTGAGTAAAATCAGAAAGTGACAGTTTACTGCATTGATTCACTGATGTAATTTTGCTAGCACTTTATTTTACAGTAGAGGGCGGTGTTTTTCAAAAGCATTGTAAGCCTAAGTTGACCTTACAATCATTGTCACTAGTACACGTCTGTGCACTTTTCATAGATATTACCTAGTGGGTAATAACTACGTACTCTATCTAAACCTACCCCTGTACCTAATCTTAACTTGCATATTACATTACTTTCTTACACAGTTAAGTACTTATTAATTTCACATTACATTATAAAGTGCATTATTTAAAAAAACAAACCTTATTATTTTTTAAAGAAATCTGTAAAGTTCTCCAAGAGATTAGTTGAACTTGAAATAAGGCCCATTTATATTGCCCATTAGAATGTGTTTCTCAATGTAGTTGTATTAATAATAATCATAACATACAAATAGCTATAATTATTATTCAAATTATATAATTATTAAGAAATTATCTGTTTTTTCTTCTGTTTTAATTTAAATAGTCATACAAGGAAATTTGTCAAAAAAGAACTTAAAATAAGCTAAGAAATCATAAAAAGATAATTATAATTAAAGTTTCTTATAAGTTTCATTTAGATAGCCACATTGCAAGACTGAGATATTGCTTTTATAAAACAGTTTGACGAAATAGTTATATATATATATATATATATATATATACACACACACACACACACACAAAATACACATTCCTGTTATGCAAGTTCCATCTCACACTCAATACACTACAATTACTATAGTATAAATACAGCACTACAACATACAAAAGAGAGAGAGATCGACTTAGAATGTCATTTACCAGTTTCTTATCAGCTGTAGTTTGTAGTTTTACACTGCGTTTTTCTCCTCTAAGGGCTTATTTTGCTATTATTATGTGGTCTCTGTCACCAACCTGTGGATGGACAACATCATCTGTCTTTGCTCAGTATGACATAATGGATGCCGATTTGCTGTCCCTCCAAAATTATAAATATGAAAAATAGACACTATTTTTATAAATTGTGTCATTGCTATCTAAACAACAACATTCTCACCTAAAAAAAGCCTCAAAATGTTGTCCAACAGCTGCAATATTTGTCAAATCCTTTGCTTGCCACTCATATGGGCGGAGTATTATACACCATTGAAGAGGCTGTATGAGTTTTGATATTGCAGAAAATTGTAGATTCGTAAACCAGATTGAACTGTTGTGTAAGCCTTTTTATGGCAAATTTTTACTTTAAAGTTACTTTTGTTCAACCAGCAAGTTTGTTTTGAAAAGGATATGACACCTGGTGTCCTCTGAAAAAATAAGAAGACTGTACAAGAGGCATCATTGTGGAAGACAGTATTTCTCAGCTTATGTTTACATTTGAACAAAACATTAAGAATTTGCCAGGGGTAATAATAATCGAACGTGACTGTATGTGTGTGTATTCACAGTGTTTTGTGTTTGATGTATAATTGTATTTCAATATATTTAAGTATACACAGTACAAATGTATACGTTATGTAAATACAAACCTTTATTTTGTATGCGACTATTCAAATTAATTATTTGACTGCATTACTAAAAGTCATGTAACTATTAAAATAAATTCTAAAAAATTAAAAATGGAATGATGGGAAGAAATAACTGAATTTTTTTAGGGTTCATACTGTGTCAAGAAAGATACATTTCATTGCTTTTATTTATAATCTTTGCTCACGACTTTGCCATGAGCTATTTTGTTACTTAACAGCCACAAAAGAGTTGCTGAAAGGTGAACCGAGAATCATTATGAAATCAAATCATGAGATGTCTAAATATGCTCACCCCTAGAAGAAAAAGATGTCTTGTGAGGCGCTGAAGGGCAAAATAAGGAGAGTTTAAACAGGATAAGTGCTGCTGTTTAAAAAAAAAACAAGCAAAATGAAACCGTTCAGAGCAGCAAAGCAAAAGTCCTTCAAATGACAGGATGGAGGAGCTGCAGCTTAGATGAAGTGAAGACATTATTTGAGGCTGAGCGATGGGAAGATTGGAGCAGCTGAAAGGATTTGGTTTTGGAGCGTGTTTCTTCTTGACCTAGCTTGAGCACATTTGATCTGCTCATTCAGAGACAAGGGTACTTATTTGTATGGGGGCTGGAGTGAGAGCTTTGGTGTTAGGTTGTGAACACGAGGAAAAGCTGTTTTCTATTGCTCTGAGAAATGGGGTTTCTATACTCTGGGGCTTTACTTCTCAAAATGAAATGAAAAAGTACAGCTCTTCTACTGAGCTATTTTGTTGAGCACAATAAGAACCACTTGTTCACAAATATCAGATTGATTTGGCTGGATGGGTCACAGTGAATGATGCACTGTTTTTTTCTGCTCTTCTTTCTCAACTCTGTCTTAAAGCAGTCATCAGTAGCGATCGATTTATACTGGGATTAAATTGGCATGGGAGAGGATTTTTTTTTCTCAGAAAATGCTAGTTATCACACCAGACTAAAACTCTTAGACTTTGCTGTTACATAGTGGAACAACTTTCCCAGTTTTATTTTTATTTTTTATTGGACTAAACCTGGCCCTGGATATGTGAAAAAAATTAGATGAGAAATGTTGTATTCAATCTTTTCATCATTTTTTGTCCAATAAGCTTGATTTTGGAACTGATTAATCTGATCTGAGCTTAAATTATCACCTGAGAACCATATTATTGTCGATAATAATTTGTTTCTCAGTGAGCTGACGTTATTTTATACGGAGTATTCAATATGTCATAATTTTTTTTTTCACGAAATATATTCTGAAGGAGCTGTAGACATTGAATTGAACCAAATTTTGGTTAAAACCCAAACAATAAAAATATAACAAAACAAACATAAACCTGAAAAACGAGTTGTGTAATAACAATGGAATTACACAAGAAAAAGTACTGAACTACTGAAATGTATTTAAGACTTCATAAAAAGTATTTTTTATTGATGGCAGTTTAAAGACTTCTCACATGTGGAGAAGTTACACATTGCTTAGGTGTTATTTTTAATTTTTAAATTGATTTTTTTTTTTCAAAGCCTTAAACAAAAATCTTGATGGTTCTGTGGGTGTCGTCTATCAAATCTGATTTTTAATTTGTGTTTTTTGTTGAATTCAAGTCGACTGATTGGCTGGCCTTTTTTACAACTTGATTTTTTTTTCTCTCTTTCTGAAACCATTTAAGATTTTCCTTGGCTGTGTTTTGGATTATTGTCTTGCTTAAATGTCCACTCAGGTTTCATCTTCTTCATCCTGGTAGAGCAGATTTTGGACTGAAGCAGCTGATATTTTTCCTTGCTTAAGAACTACTGAGAGATTTCATCTGCTGTCTGGGCTTTCACTGCCTTTCTACAGTTACCTTTCTTCATATGTTAAATTTTCCATTTCATTTTATTATACATAACTTAATTTGCAAACGAATTAACATTGTTTTCTTTGCATATATGGAGTTACTTGGTTTTTACGAACATCTGAGGAAAATTTCTAGATGACAGCACCTTTAGAAAATATGTTTTCTGAGGAAAAGGGTAACATGTTGAATTATTATTTTCCTCTTTCCATATACATATTATATAAAGTTTACAGGATAAGTTTTCTTTTCAAAAAATATGCTGAAAACATACCACCTGGGGGAAGATGACCGTTTTAATAAAGAGAAATGCTATGCATGTATGTATATATTGAATAATGAATTTAACAACTTAAACGTAACTGTTTAAAATACTGTACAAACGGATTCATAGAGAAGATCCATACTTCCATTCCCATCCTTATTCAATACTGGGTTCAGAAACCTTAAAAGCAGCAGAGAAACAGACACTAAAATACATAGCAGCACCTCAGGATGTTAATCTAAATGTTCTTCTTAACACCAGCTGTCGGCACTGAACACCTCTGTGTTCATTTTTATACACCGCTCATCCTCGCATAGATGCTGGCCAAAAGTGGGGGCTCAGCCAGTTTTATATTAAGATTTCTTAAATTCTTTGCGACTGGTTTCATGCACGTTTGGTTGCGCTCAGCAGGTGCTCATGAATAATCATGCACGTCTGCATGTGATTCCAGACATACCACGCTCAGAATAAATATCCCATAAATTCCATCCTCTCAAAAAAGCTGTATGATAAGTGCCACATTGCCTCACGGCCTTTCTGACGTTTTAAATGACCTGCTTTATTTCAG
Seq C2 exon
CTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903:ENSDART00000127454:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]