DreINT0098433 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10832501-10832750:-
Coord C1 exon
chr2:10832655-10832750
Coord A exon
chr2:10832570-10832654
Coord C2 exon
chr2:10832501-10832569
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
GCTTCTGTCTTTATTTTCAGGTT
3' ss Score
12.11
Exon sequences
Seq C1 exon
CTGGTATCTGAAGATGTTACAGTGTAATAAGTGTAAACAGTGGTTTCATGAAGCTTGTATCCAGTGTTTTCAGAAGCCAATGCTCTTTGGAGACAG
Seq A exon
GTGAAGTACTGCTCCCTTATCATCTGAATAAACTAAAGCCCATTGATTGGTAATAAGTATAACCGGCTTCTGTCTTTATTTTCAG
Seq C2 exon
GTTCTATCTATTTATTTGTTCAGTTTGTAATAGTGGACCAGAGTACCTCAAACGCCTCCCTCTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATCTGAAGATGTTACAGTGT
R:
ATCTCAGAGGGAGGCGTTTGA
Band lengths:
163-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]