MmuINT0101699 @ mm9
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108521080-108522425:+
Coord C1 exon
chr5:108521080-108521175
Coord A exon
chr5:108521176-108522356
Coord C2 exon
chr5:108522357-108522425
Length
1181 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTTTTTCCCCATTCTTTAGGTT
3' ss Score
11.53
Exon sequences
Seq C1 exon
CTGGTATTTAAAGATGCTGCAGTGCTGCAAATGTAAGCAGTGGTTTCATGAAGCTTGTGTCCAATGCCTTCAGAAGCCAATGCTGTTTGGAGATAG
Seq A exon
GTAAGAAGAAGAGCATTAGAATTTTAATGATTAGTTTGTCATGGCTGCTTTGTAATTGTGGTTATTTTGCAGTTTCAGATTTGTTAAAGGGATCAATTCTGAGTGAAAATACTAAATAGTAAACATGCTCTCTATATTTTCTTTGTTTTTAAATACTATTTCAGAAAGCTTTTAAGTATTGTCTCAGTGATTACATTTGTTTCTATCACGCTACAGTTCTCAAAAATATTGTCATTGATTCCTTCTGTTCATGAAGCTCAAAGTAATACTGTGAGAAAAAAGACCATAGGCTATTATTTTAAAAATTGTATATTAAGTTTGAAAACTTGTGAAGCAGTCATCATGTACTTTCTGTGCCAGGATATTAAGATAGGACAGTGAGCTCTGGGAAGAAAACCTAGAAAGATCGTTAAAGTTGGCTTACTGATCTCTTGGCTTAAATCTTGGTTTAAGTAAGGATAAGTGTCCTTTAGACCTTGGTTTGCTTTTGACTTTATTTTATAGCTCCTTTTGAACATTGAGTGTCGAAAATCAGGTGTCGCTTCTTATTCCGACCTGCAGAAAAGAGAGACAAAACTACATTCTTCTCAAAGCAGTTTATTCAGGAACCTTTCAACATCATGCATGAATCTCTCTCCAGAAATCAATCTCTCTAGTGAAAAACAACAACCACCCGCCCCCAATTACAATCCCTTATGTATCCTCTCAACCACGCCCCATCAGCCCAGTTCATGTAACAGCAGTCCATTGGCCGGAATCATCACTCGTCATATGGTCGGATCTGCATCATGGTGCACCTGCGCAGTTCACCCAGTGCCTTATTTTCAGGTGTATGAGGAAGTCAGGTGCAAGACATAAGACTTGGCTGCAGTCCCAGGCGCCATCTTGGGACTGCTGCCATACCCGCTCCTCACAATCAGGGTTAGGGTTAGAAGTAGCCATCAAAGATTTGGCAGACCTAAGCTATTAGTAAGAATAACTGGAGAATTCTCTAATCGTTAAGGAAATTGTCCCTTACCCCTAGATAGGAATTGTTGGTTATTAGTGTCATAATTGAAAGTGCCTTTTGACTTGTATATCAGTTGTTAAATTATAAAGCCTTATATCACTTGATGAGTATTGGCTGTAATCATTAGCTAGTTTGAATACTCACTGTAAAACTTTTTTTCCCCATTCTTTAG
Seq C2 exon
GTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCGTTACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-Mtf2:NM_013827:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: