GgaINT0037224 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12947765-12949202:-
Coord C1 exon
chr8:12949107-12949202
Coord A exon
chr8:12947834-12949106
Coord C2 exon
chr8:12947765-12947833
Length
1273 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CATGTGTATATTTTTTTTAGGTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
CTGGTATCTAAAGATGTTGCAGTGCTGCAAATGCAAGCAGTGGTTCCATGAGGCTTGTGTGCAGTGCCTCCAAAAGCCGATGCTTTTTGGTGACAG
Seq A exon
GTAAGAGCTCTTGAGCTGTACTTAATTTTTGTTTTTATTTTAATTAGGAAGAAGTATCTCATAGATGAACTTTAATGAAGCGTGTGACTTAAGTGTTTTTCAAAAACATTGTGGTGAGTGTAGCATAGGAAGTTACAGAAAACAAAATGTGTTCAAGTACCAGGGGGGTGCTTTTTGCTGTCTCTAAACAGAGTTGTTAAACAGCCTTTAAACAGAAGAGGAAAAGAAAATTAGGGTGGGGTAATCAATGGAGTGCTGATTTCAAACTGTTATTGACTTAACTTTTTTTGGAGGTTCATTATGCCATAGGCTACTGGGGGATCAGAAGTGTTAAAGCAAAACACCATAGTGGGCTTATAATGTAGATGAGGATTTTCTAGATCTCACCATGTAGAACATAAGCAATGGCACTGTGCTTTGAAGTAGGCTGTTGGCATGTATGTGCAGAAGAGAAGATGTAGCAACTGTGTGAAAATGTGCTGTTAGCAGAACATGGTAGATAAAATGTTTTCCTATATTCCTGCTTGTGCTGTTGCTTGTAGCTCATCAGTGCTTCTGTTTGTATCTGACTTGTCTAGGTCCCACTAACTGTTTTCCTGCTCACTTGGAACTACTAGTAGAGGGAACTGGAGAATCAGGAGGAATAGTCAGATGACAACTCTTTATATTTTGTGTTCTTGTGTGATGAGTGGAGCAAAAAGGAAATGAGAAAGGGCATTGGTCTGTGCTTCTGTTTTAGGAAGAGCTTGGAGTAATTGGAGCAAATGAGAGAAAACTGGATTAAGGAACCAAGGAATGTCTAATTTGTGATCTGTTGTTTTGTTTTGCCCTTTGTTGTGCTGAATGTATGAAGAAAAGATCTAGGAGATGCTCCTTTAGATGCATACTCGCACTTGTGCGTAGGCTTCTACATTTGAATGAAAAGAATAGGGACACTGGGGAGCACAGTCAGTAGTCAGGGAAGAAGAGAAGGAAGATGTGGAGTATATAATTTATGAAGTAGAGACCACTTCTGGGTCAGATATAAGACAATACATTTTGTGGAAATTGATGGCAGGTGAAGGGACTCAAATTCATGTGGCTGGGTTTCTGGCCTACTTGATTTTTCATTTTTCCCCAATACATCCTTGAAAAAAGAATATAAGTCCTTTGTGGAATTATGAGGTGACAGTTTATAGTAAGTAGCATGTTAAAACATCTTGTATGCATGTATGTGTGTACAGACACCCATCGGCTAGTCACACATACATACACATGTGTATATTTTTTTTAG
Seq C2 exon
GTTTTATACATTCATTTGCTCAGTTTGCAGTTCTGGACCAGAATACCTCAAACGTTTACCCTTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(60.4=100)
A:
NA
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]