DreINT0098435 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10827722-10829622:-
Coord C1 exon
chr2:10829499-10829622
Coord A exon
chr2:10827790-10829498
Coord C2 exon
chr2:10827722-10827789
Length
1709 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
TTTAACTTTTTTTTTTGTAGCTT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTAGACGTTGCACACCTGAGCCTCTATAACCTGAGCGTCATTCATAAAAAGAAATATTTTGACTCTGAGCTTGAACTGATGACTTACATCAATGAAAACTGGGACCGGCTTCAGCTTGGCGAG
Seq A exon
GTATCAGTTTGTATTTATATATTTTTTTCTTTTTGTAATTTGCAGTAATCAACAAGAGTTAACCCTTGTATACTGTTCAAATTTACTACCCTTTCGTTATGGCTGCTTTTGCCCCGTTGACTTTCATTATAATGACTTTTTTTTTGATTGCAAAGCAATGACAACACTGTTTAATCACACATTTTTGATTGTTGGTGGTTTTCTCTGTTGGGAAGAGATCAAATTTGTGAGAAAAAAAAAATAAATAAATAATAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATAATGTAGATCATCAGTTAGCAGCATTAACCCTTTAGGCTGCATTTATACTGCACTGTTCAAGTGACTCAATTCCAAATTTTTATATATTTTTTTCTCCCATGTGGCACAGATCGGATATGGCCCGTGTAGGTGTAAGCAGGAACAAATCACATGGATGCCGATTTACTCAAATCAGATTTAGGCCTTTTTCATATGTGGAAATGTGTACGTGTTCTCGTGTCTGCAGTGTAAGCAGGTAGATCGGGTTTTCACCTGTCAATGCGAGTCGCGCGTCATTTAAAAACCATAGCGAATGTCGTCAAGTTTGACACTTTCTTTTCAGAACAGACTTCAGCAGAGTCCCAAACCTTAAATCTCATACACGAGGACTTAAACAGCTTTCATACTGTAATATAGCTCAGGTATTTAAGCATGTTTACGAGAGCAAGAGAGCGCAGTGTCCGCCATGTAACCAATATAAAATAAATATAAAACTAGCTTAGTGCACACATCACATGCATAAATCACGCCATGGACATTAAATTAAGATGCATAAAGGTTTAAAAAAGCCTATATATCAAAAGAAGATGGACATATGAGAATTTTTCGGTCATTAACTATAGTAAAACAGCTTGTCAAAAGCTGCAAACAGATTACGTACAGGAATGGAGAAAAAAAGGCTCTTTAATTATCAGCTGTTAGTCAGCGCCTGGTCGTTGAGCCTTTGCCGTGTGCTGTGTAAATGCAGACGATCGGATACAAGTCACTTTTAAAAGATGATGTAACAGGTCATCAAAAAAATCTGATACAGTCACAAAATTGGAATTGACCATCAAGATCTGCAGTGTAAATGCAGCCTTAGATAGGCCTGTGCAAAAAAGTTTTTGGCATTTATATGCAGTTCTATAGAGTAAAACAGCAGATTATAGTGTTTGTGCATAAATACATTTACATTGTTTACTTTGTCCTGACAGCTGAGCTGCTTATTTTGATTTTATTATTGACACACATACACACAAACAAACAAACACACTACATATAGAAGGCTAAAGCCTTTTTGCAATGCAACTGATGATCAACAGTAAAATAAAAATTTGACCTCTTCTTAACAGGGAAAACCAGCAACAATCAAGAATCCATGATTATTTGGTGTCAGGGTTATGCATTCAAAAAATGTCATTTAATGGAAAGCGATGCAAAACAGGCCACCAACATAACGAAAGTTATGTAAATGAGTCTATTGTAGAATTTGATTTAACATTTAAAGCATTTCCCCAAAATAAGATTTGTCACAGAAAATCATTCCGTTTCCTGAAACACAGAGTAGGTTGTGGTCAAATAAAGACTCAATCACCCCAAAGTGGAAGAAAACATCCCCAACAGCACACAAGGGTCACTTTAACTTTTTTTTTTGTAG
Seq C2 exon
CTTGCAGAGACTCCGAGAGCAGAACGATATGAATGCATTCTGGAAGCACTTAACAACAACCTCGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGACGTTGCACACCTGAG
R:
TGTCGAGGTTGTTGTTAAGTGCT
Band lengths:
191-1900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]