MmuINT0101701 @ mm9
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108523144-108528205:+
Coord C1 exon
chr5:108523144-108523267
Coord A exon
chr5:108523268-108528137
Coord C2 exon
chr5:108528138-108528205
Length
4870 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGTTTCTTGATACTTCACAGCTG
3' ss Score
7.41
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
Seq A exon
GTAGGTGGCTCAGAGCTCCTTGATTTGTTTTTGTGAAAAACTGAGAAGACACATGAATAAGTCAGACAACTAAGGTTTAATTTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACACTTTGGTAAGGATATCAGAGCTACTGTTTTATTTTCCTGTTTTGGGAAACTTGGTGGAAATAAATTACTTGATTCTTACTATTTTTCATTTTTCTTTTTTTTCTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGAATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTTTTTGATTTTTCAAGACAGCATTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTATGCCAGGCTGGCCTCGAATTCAGAAGTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTGCCCCCTCTCCCCCCAAACCCTTTTAAAGATAAGGGTTTCTTTGTGCAGTTCTGGCTGTCCTAGAACTTACTCCGTGGACCAGGCTGTCTTTGAACTCATTGACCTTCCTGCCTCTGCTTCCTGAGTGCTGGGATCAAAGTAATATGCCACCTTGCCCAGATACTGTAATTTTCAAAAAGTAAAGAAAAATAGATTTCAGAAATAGATCAGTTTTGTTGTTGATTTTCAGCAAAGTAGGAAGTCGATATTTCAGATAAGTTAATTTTGAAGTTTTATAAAGCAATTTTAAAAACCTTATAAGAATAAATATTCTGAATATTCTTTCAGATACGTAACACTTTTATTGAATGCTGTGGACATGGTATACACATTATAAGCTGACTTCAAATAAGATATTGAAATGCAAAGTAATTAAGTAAAAGTTAAGTGGATTTGTAGCTGACTTGAAATACAGTAAGAAAACTAGTTTGGGAAATATTGATGGAGTTTGTAGAAGAGGCCAAAGTTCTGTTTTGTCTTTGGAAAGGATGTTGGGATCAAGGGAAAATACCTGAAAATTTGAGCTGAAAACAAGAGAATTGGCACACACCTTTGATGACAGCATTTGGAAGGCAGAGGCGGGGAGAATACCATGAGTTTTATTCCAGACTAGTCTATGTAGAGGGTTCTAGGCCACCCAGGGCTACATAGTGAATATTTGTCTCAAAGAATATAAAATAAAAATAAAGCCAGTTACTCAGAAGGCAATTGTGTAGGATCACAGGTTCAAAGCCAGCCTAAAATTGAGTGAGACACTCAGAGGTAAGCTGAATATGGTTGCAGACATCTATTGTCACAAGTTTGGGACTAACCAGGCTATAAAGCAAAACTTTTTCTTTCCCCACATTTAAAATAAATTATAGGGTCCTGCAGATGTGGCTTAGATGGTTCTTGCCGAGCATAATGAAGCGCTGGGTTAGTCCCTGACAGCAGCTAAGACCAGGCACATGCCTGTAATCTAGTACTTAGGAGATGGGTACAGAAAGATGAGAAGTTGAAGGTCAGCCTGGAATAAACAGTAAAAGGAGGACCTAGGATGTAGTTCAGTGCTAAAACACTTGTGTAGTGTATATGAGGCTCTTAGTTTAATCTTTAGTACTACAAAGCAGGGGTCGAGGGGGTGGAATATTTATAAAGTCTTGTTTCAGTTGCTGTTTTTCCCCAGACAGGGTCTCACTGTCTTATCTCTGGCTATCCCAGAACTCACTGTGTAGATCAGGCTGTGAGTTTTAACTCAGAGAGATCTACTTGTTTCTTCTGCCTGTCTCCCAAGTTCTGGGATTAAAAGTGTGTACCACTAAGCCCTGTTTTTCTCTTTTAAATTTAAGCATAATAATACAGATAGGGATTTTTGATTTGATTATTTATAACTCCTGATAAGACTTCAGATTTTGATGATAAGAGGGGAAGATCAGTCAGACAGTTTAAATGAAGTAATCACATGATGTGACATATTAGAAACTTGACCTTGGTTTCAAACTTCAGTTATTTCAGAATTGTCTTATAAAATGGAAGAGAAGAGTTTGAGAGCTTTCCCTCAAGTATAATGCTCATGAAGTGGGGTTCAGTAAATGATTTAGCTTTTACTACTAGTATTAAGCAGTGATGATAACTGGATCTCTTCTGAAAAGATTGTAGTCTTTTTTTTTTTTAAATATAAACACTTCATGAACTTGAGTGTCATGCTAATTTTATCTTTATTGGTCCAATTTTAGTGTATGTGCTGTTGAAGTGAGCACAAGATTGTAGTCTTGATAAAAGATTAAGTCAGATCTAGGGCTTCCTTATTTTCTTGCAAACTTCAAAATCTGCTTATTCTTCCTTAAATAGAAATTCTTCCATTCTTATTCTTTTTTAAAAAGGAGTTCTGTGTCTGAGCGTGTACTTTTGAGGGTTGAATGTGTGCTGCTTTTTGTTATTTTTAAAAGATTTATTTATTTTATGTATTTGAGTACACTGCTGTTGTCTTCAGACACACTGGAAGAGGGCCTTAGATCCCATTACAGAGGTTGTGAGCCACCATGTGGTTCCTAGGAATTGAACTCAGGACCTCCAAAAGCAGCCAGTGCTTTTAACTGCTGAGCCATCTCTCCAGCCCCTTTGTTATTTCTCTCTATGTATCTCTGGCATCTTGAAACTTACTGTGTAGACCCGACAAGCCTCCCAAGTGCTGGAATTAAACGCAAGTGCCACCAAGCCCTGCAAGCATGTGCTTTTGATGTGTGAGGCCCTCAAAACTCCTTCTAAAACTCTGTTATGGGTATCTAAGATTAGGAGGACAATCTGATAGTGACAAGCATAATTGGCCTAGTACAGTTAGTACTAGCACCAAAGTGCTGATAGAATATCCACCTGAGTTTAGGTTCTGGTGTTCTTTCTAATCAGGAGAATTTGAGCAGTCCATTTTACCTTTGTATGGCCTGTGTGCTATGAGGTGTTTGGCACTTAGGATGTCCACACAAGATTTGTCTTTTGAACCCTGAATTATACTTGGTTTATTCACACAAACATTCCATATAATATGCTAATATAAAAGTCTTCGACCAAGTAGCCAACAGCCAAGCAGGCTGTGCAGGCTTCCACTGGGTGTCCAGTAAGGAAGCTTTGCAGGCTTGAACCATGTCCACTGCATGTCTTCCTCTGAGGCAGGCTGGGAGAATGGCACTGGTAGAGGTCTTTGAGAACATTACCTAGCGTCTTGCACTGAGCGGTGGGCATGCGTGAGCTCAGCAATAGTGCCAGAAGTTCAGTGGTCACTTAACTTAGGCCCCACACAGGCCAGTCATAACGTCCTCTTGCTAAGGCAGAGGCTTGAGAAGCAACATCTCAGGAGCTTTGTAGTGCAGTTCTAGGGGCTGCTTTTAAAGTTCCAATTTTTTATTGTTCATTAGACTTTAGTTTTGTGCTTTCAGGGTTTACAGCGTGGGGTTGGTTCACTAGCATATCAATGCTACCTTAAGGTTAACTTGTTAGCATATCAAGGCTTGTCTTGGGCTTGACTTACTTACCTCTGAGTTGTCTCCTGACTGGTTCATTACGATATCAGAGTTTAGGGTGGGCTGGCTAGCTCCAATTTAGGCTGCCTGGTGGCAGACTCCTGTCTAGAAGACATTACACAAAGATTTCACTTATGTCCTACCTACTTTTCTATTAACTCATCTGTAGAACAGAGTTAGAATAATGACTTGTGAGCCTCTTCTATCTCCAACATTCTTTTTGGCAGATAGAGTTCTCTCTCACTTGATGTGTTCTTGGGTTTCGGAACTTCAACTAGTGAAGAACATATCTTGTGTCAGATTACATAGAGCTCTGTCTGACTGTCTATCTCAATCAATCAATCATCCAATCTGTGGGGCCAAATTTTAAACTTCTGTTTGTTTGGGTTTAGTGTTTTTGAGACAGGGTTTCTCTGTGTTACCCTAGCGGTCTTGGAACTCACTCTGTAGACAAGGGTAGCCTTGAACTCACAGAGATCCACCTGCCTTTGCCTCTCAAGTGCTGGGATCAAAGCTTTGTGCCACCACTGCTGAGTGAATATATAGATATTAGAAACAGTAGTTTTTGGGCTGAGCTGTGGTGGCTCCTGCTCCTTTTATCCCAGCACTTGGGAGGAAGAGGGAGGTGGATCTTTATGAGTCTGAGGCTAGTCTGGGCTCCAGAGTGAATTCCAGGATAGCCAGGGCACACAGAGCAACACTGTCTTGGAAAGCCAAAAGAAAAAAAACAGCCAAACAAAAGACCCAAAACTCTAGTGGTTTGTGAAGGTGAAAAGGTGCTGAGCTATTTGAGACCAACTAAAGTGTATAATTGAGAAAATAACCCTTCGAGTTTCACATTTTGTTGTTTTTGTTGTTGTAGAGATCTTGTGTAATATTATTAAAGTTACTATTTCCCTAAGTTATAGAGTTATACAAGTTGAATATAACTGCTAATGTCAGTTTTATAGTGTTTATAGTATGTAGTTCTACAAATACATTTATTTCATGTAATGAACTAATATGGGTATAAAATGTAAACTTTTCTTGTATCATAGAAAGTAAGTCTTGAAAGGTTCAGTGGCACTCGGTAGGTCATATAATAACTTAGTTAGGACCCAGAAAAAACAGATGTTAGGTCTTCTGAACACACATCCTGTAGCTCTGTCTAACACCTGTGTATTATTGAGTAAACTTAAAGTGTATTAAATTGTTTCTTGATACTTCACAG
Seq C2 exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267-Mtf2:NM_013827:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: