DreINT0098850 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46087038-46087299:-
Coord C1 exon
chr8:46087217-46087299
Coord A exon
chr8:46087111-46087216
Coord C2 exon
chr8:46087038-46087110
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTTTTCCTGTCCAACCACAGGCA
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTCTGGTTTGACAGGAGGACCAACTACACACGCTCGCTAGCTGTTATGTCCATGGTTGGCTATATCTTAGGACTTGGAGACAG
Seq A exon
GTACAAACTAAACCACCAAACGTCTTTTTATTAGTAAAACTAGTTTATTTGTAAATTATTCAGATTTATTATTATTTAATCATTATTTTTTCCTGTCCAACCACAG
Seq C2 exon
GCATCCTTCTAATCTGATGTTGGACAGGCTCAGTGGAAAGATACTGCATATCGATTTTGGAGACTGTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTTGACAGGAGGACCA
R:
CTCAAAACAGTCTCCAAAATCGA
Band lengths:
155-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]