GgaINT0133945 @ galGal3
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4137646-4138902:-
Coord C1 exon
chr21:4138820-4138902
Coord A exon
chr21:4137719-4138819
Coord C2 exon
chr21:4137646-4137718
Length
1101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCCTACTCCTTCATCAAAGACA
3' ss Score
3.28
Exon sequences
Seq C1 exon
GTATGGTTTGACAGAAGAACAAACTACACTCGTTCACTAGCTGTGATGTCAATGGTTGGGTACATTCTGGGTCTTGGGGACAG
Seq A exon
GTGAGTAATACTGCAAAAGTTTTTGTTTTTTAAACGAAAGCAGACTGCAAAGACCTCTCAGTCTGTTCATTGAATCTGCTCTTATGATAACATCTTTCAGTATGGATATTGCTGAACTGTGATGACACCATCTTTATGGACTTTATTGTGCTGCCCTTATTTTCAACACTGCAGCATGTGATAGAGTTTGTGCATCTTGAGAACAAATAAGAGTTTCTTCTGTTCTGAGAGGAATATACCCAAGACTGTATCAAGAGCCACAAGTTCTGGTTTTGGCCTTTCAGTCATAGGATTTCCCATTTTTTTCCATGAAGTGGAGAAGATAATGCTTTTTCTGATCTGCATTGCAGACATGTTCTGGAGGGAAGTATAGACTAAAATGAATTAGGCAAATGGAAAAAAATGGTAAAACAAAGAAATATTGTATGTAGTACATGATTCTGTGTCAAAAAGGGGCATTGTAACTTTCAAAATATTTTTGAAGGCAGTATCATTTAGAATTGAGGTCTGTAGTGCCAAAAAAGCTAAATCCTCAAATGTTTTTATACAAGAAGCTTCTATTCTTGAGCTTAAAGGCTTTTATAATGAAATTTAAAACCTCTAAAAATTGGATTAAAGCAAAATTGGAACAAGTCAGCACGAATAACAGTATCTTGGTTTCTGTTAGTCAAGTCTGATTCTCTTCTCTTCTGGTAGTAATCCAATTTACGTTACTTCACTTGCATAACTCATTGTATTTATATACTGGAAAAAAAAAAGGAAAAGGATAATACAAAAAGAAGAACTTAAAGAACTTATCCTAACTGGAAAATAGATGTTCATATCCAAGAACCGTACTGATGGCAGTGATCCAATAGGTTGTTTGTCTTCCCTGATGAGATGATATCTAATTCCTGAGAAGTAATTACAAAAATAATGTGATAGATGCACTGTCAAGGAAGCTGTTCTGTTCATCCCGAGATTGAAGACCTCAGACAAGCAAGCTGTCACTGGCTATTCTCATTCATGAAGATAAATATCATTTCAGACTAGAGCTGTGATTTACTTTATTTTTTCTTAATGACCTGTCAATCTGCTTTTTCTCCTACTCCTTCATCAAAG
Seq C2 exon
ACACCCTTCCAATCTGATGTTAGACAGACTGAGTGGAAAAATCCTGCATATCGACTTTGGGGACTGTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]