DreINT0099083 @ danRer10
Intron Retention
Gene
ENSDARG00000058556 | muc5.2
Description
mucin 5.2 [Source:ZFIN;Acc:ZDB-GENE-121108-1]
Coordinates
chr25:8340830-8341152:+
Coord C1 exon
chr25:8340830-8340924
Coord A exon
chr25:8340925-8341022
Coord C2 exon
chr25:8341023-8341152
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTGGGATTCATTGTCTGCAGAGG
3' ss Score
4.83
Exon sequences
Seq C1 exon
AGAAACTTGCTAAAGACTGGTGTTCCCGTCTGACTAACCAAAGTGGAGCCTTTTCTGCATGTCATTCAGAAATATGCCCAAAGATTTACTATGAA
Seq A exon
GTGAGTTCTTTTGTATATTTCCTTTTGAAATGAACTATATACAGTATTTATAGCAGACGCATTATCATTTTGTCACATCTGGGATTCATTGTCTGCAG
Seq C2 exon
AGGTGCGTCTATGACACCTGCAAGTGTGCAGATATCAGGAAGTGCATCTGTGCGGCTGTGTCCACTTATGCCCATGCTTGTGCTGCAAGAGGAATCATTCTCCAAGGCTGGATGGATTCAGACCCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058556:ENSDART00000153536:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(40.8=96.9)
A:
NA
C2:
PF087426=C8=FE(56.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGCCTTTTCTGCATGT
R:
GGGTCTGAATCCATCCAGCCT
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]