HsaINT1023940 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1172429-1174622:+
Coord C1 exon
chr11:1172429-1172523
Coord A exon
chr11:1172524-1174495
Coord C2 exon
chr11:1174496-1174622
Length
1972 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACA
5' ss Score
5.35
3' ss Seq
GATGACCCCCTTCCCTGCAGAAC
3' ss Score
9.91
Exon sequences
Seq C1 exon
AGAAGTATGCTCAGCACTGGTGCTCGCAGCTGACCGATGCCGACGGCCCCTTCGGCCGGTGCCATGCTGCCGTGAAGCCGGGAACCTACTACTCG
Seq A exon
GTAACATCTGCCGCCTCTTGGCCCGGTGGGGCTCCAGCCACTGAGCCTCACGGCTGCCTCCAGGAGGGCTGGGAGGGCACTGGTGGGCTCAGCAGGCAGGACTAACCTTTCTAGGCTGTGATGGGCACCAGGGGCTGGAACCCAGTCTGTCTGTCCAGCTCCATTCCCCACATCCCCACCCACCCATTCACTCATTCACACATTCACCACTCACCCACACACTCACCCATTCACCTACTCACTCACCCGTTCACCCATTCACTCACCCACTCACTCACCCATTCACCCATTTACCCACTCACCCATTCACTCACTCACCCACTCATCCACCCATTCACCCACTCACTCACCCATTCACCCATTTGCCCCCCCACTCACTCACCTATTCACCCATTTACCCACTCACCCATTCTCTCACTCGCCCACTCACCCATTCACTCACTCATCCACTCACCCACCCATTCACCCACTCACTCACCCGTTCACCCATTCGCCCCCCCACTCACCCATTCACTCACTCATTCACTAACTTACTCACTCACTCACTCACCCACTAGCTCTTTCACTCACTCACTCACTCATTCATTCACTCATATCTTCACTGACTCATTCACTCATTTACCCACTCACTAATTCCTTCACCTACTCATCTACTTACTCATTCACTCATCCGCTCACTCATTTACTCACTCATTCACGAATTTCTTCACTCATTTACTCATTTACTCACTCACTAATTCCTTCACTTATTCATTACTCACTCACTCATCCACTCACTCACCCACTCACTCACTCATCCACTCACTCACTCATCCACTCACCCACTCACTCACTCATTCCTTCATTCATTCCTTCACTCACTCATTCACTCATTTACTCACTCACTAATTCCTTCACCTACTCATTCATTCATCCACTCATCCACTCACTCACTCATCCACTCACTCATCCACTCACTCATCCACTCACTCGCTCATTCCCTCATTCATTCCTTCACTCACTCATTCACTCATTTACTGACTCACTAATTCCTTCACCTACTCATTCATCCACTCACTCACCCACTCACTCATCCACTCACTCACTCATCCACTCATTACTCATCCACTCACTCATCCACTCACTGATTCCCTCATTCATTCCTTTACTCATTCACTCATTTACTCACTCACTAATTCCTTCACCTACTCATTCATTCACGCACTCATCCACTCACTCACTCACTCATCCACTCACTCATCCACTCACTCACTCATCCACTCACTCGCTCATTCCCTCATTCATTCCTTCACTCACTCATTCACTCATTTACTGACTCACTAATTCCTTCACCTACTCATTCATCCACTCACTCACCCACTCACTCATCCACTCATTACTCATCCACTCACTTACTCATCCACTCACTGATTCCCTCATTCATTCCTTCACTCACTCATTCACTCATTTACTCACTAATTCCTTCACCTACTCATTCACTCACTCATTCATCCACTCATTCACTCACTCACTCATCCACTCACTCACTTATTCCCTCATTCGTTCCTTCACTCATTGGTTAACCATGTTTATGGCATTTTTCTTGCACTTCCAGCCCTACACTAGGCCCAGGGGCTAAACTTCAGGGGTTTGTTGCCCACCTGGCCCCAGGGGCCAAATGAGAATTAGGCCAAGGCTGAGCTGATGTGCTGTGTCTGAGGCAAGCTGGTCTTGGCTGGACCTGTTGGGTCACAGAGATGAAGGATCTGGTTCTCCCAGTAACCCCTGCTCTGCACAGTGGTTCTGCTCCATGACATGCCAAGCAATTCTGCTGAGGGGGCAGGATGCCTGTGAGGACTCACAGAGGGGTCCTGGGGGCAGGAAGACCTGGGATGGGAGGACCCTGGCTGCTGGATGTGTGGCCTGCAGGGCGTGGGGGGCCACCAGGTGTGGGCTGGGGTCTCTGATGCCCCGATGACCCCCTTCCCTGCAG
Seq C2 exon
AACTGCATGTTTGACACCTGCAACTGTGAGCGGAGCGAGGACTGCCTGTGCGCCGCGCTGTCCTCCTACGTGCACGCCTGTGCCGCCAAGGGCGTGCAGCTCGGCGGCTGGAGGGACGGCGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(41.3=96.9)
A:
NA
C2:
PF087426=C8=FE(56.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTATGCTCAGCACTGGTG
R:
CAGACGCCGTCCCTCCAG
Band lengths:
220-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains