GgaINT0054949 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14164316-14165391:-
Coord C1 exon
chr5:14165297-14165391
Coord A exon
chr5:14164443-14165296
Coord C2 exon
chr5:14164316-14164442
Length
854 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
ATGTCATCCTTTTTCCTTAGAAC
3' ss Score
9.22
Exon sequences
Seq C1 exon
ATAAGTATGCTCAGCACTGGTGTGGCTTGCTCTCTGATACTACGGGACCTTTTGCTGAATGTCACTCAACAGTGAATCCAGAAGTTTACCAGAAG
Seq A exon
GTACTCGGCTCTTAACTTTTTCATGTTTAAAAGAATGAGACTTGGACTACTGATGCTAACACCTGGGAGAATAAGATGCCAATCAGGAGAAGACACATTTACAACAATTCTTTCCAAGGATTCTTTTTTACCTGCGCATCATAATATTTACTCCTTTGTAAAGTTTTCACTCGAAGGAGGATGAATTTACAGGCATTTTTTTGCTGCTAAATACCTAAACTAGGAGCTTGAACTGTCTGGAGTCTTTATCAAATCCAATGACAGAAGGCACTTTTCTGGGGATAAAAATGAGTATAAGTAGTAGTTTGCCTACTTGCTCTCAGCTGGCACCTTTCTGCACATTTCCAAGGAGAAAGCAAGAAGTGAAAGTACAAAGCAGGAAATGGATTGTTTAAAAAAAAAAATTCCAAAAATTCAACCTAGGCTCCTACTAGCTTAGTAACAAATTAAATGACTTTTTTCTCCCCCTTTATTCCTCTGAATCAGAGAGCCTAGCAAAGATGCAAAAGTCAGGTGGCATTAAATACCTACTAGTTGTTCCACTATCTATGGTACCATGGCTACAAATTGGAAGCAGCTGGGAAACCTGCTACCACCTGCAAAAGTAAAGAAGGACAACAAGAAGGAAAAATAAGTTAAAACTGTGGGCCTCTGATTACTATCTTTCTTTGCAAATAATCTTTTCTGAAAAGGCTCAAGGAAATCTTCAAATGAAAAATAGGCATGTGCTTATTTATATGTATTCAAATTACATTTGTTTTTAGCTGTAATGAACATGATGCTTCAAACAAAGTCTAAAGAGTCATGGTTTTGAAATGACAATCTGATGATCTCATGTCATCCTTTTTCCTTAG
Seq C2 exon
AACTGCATGTTTGATACATGTAACTGTGAGAACACTGAGGACTGCATGTGTGCTGCCCTTTCCAGCTACGTCAGAGCCTGTGCTGCTAAAGGAATACTCCTCAATGGATGGAGGAACAAAGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(41.3=96.9)
A:
NA
C2:
PF087426=C8=FE(56.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTATGCTCAGCACTGGTGTG
R:
TGCAGACTTTGTTCCTCCATCC
Band lengths:
222-1076
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]