RnoINT0095714 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214787284-214788364:+
Coord C1 exon
chr1:214787284-214787378
Coord A exon
chr1:214787379-214788237
Coord C2 exon
chr1:214788238-214788364
Length
859 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
CTTGATGTCCTGTCTCCCAGAAC
3' ss Score
7.9
Exon sequences
Seq C1 exon
AGAACTTCGCTCGGGAGTGGTGCTCGATGCTCACTGAAAGCTCAGGAGTTTTCTCAGCCTGCCATGCCACTGTTAGCCCGGTGCCCTTCTACTCG
Seq A exon
GTGAGACCATGATCTGCTGGCCTTGGGTGGGGGTAGGCATAAAAGCCCTTGGAGGCGGGACTCCCAAGGCCCACCCACCACTACCCACTCTGGTGTGTACTTCCCAGGGCAGTTAAAAGATTCACCAATCGAGGAGCTAAAAAAGAAAGCTCAGAAGGGTCCTTCATAGTCTTTGTGCATGTACAACCTCCCTCTTGCAAAGACAGCAGGGTCTGGAGCAGGGTGATCACAAGTAGCCTTTCTCTCCATGGGCCTTCCCTTAAAGGCTTTTCTATGATGTGCCCCATTCACATGGGACAGAGCATCTTCGGGGGAGGGGGGACACCTCAATCCTAAACATCACACCAAAGCCCTAAGCTTTAGCATATCACTCCACCCCCAAGGGTGGGTCTCCAGGTAACCCACTTCCACGACACCTTGCTGGGCACTCCTTCCTGAACTTATCTGGCTTCTGCTTCAGTTTTTTCTGTTCATCCCATCCAGGTTCCCTATGGGAAGCCCAAGTAGAATGACACCTCAGATACAGGTTGACCCTGCCCTTGTCTTACGGACACACTCTTCCTCAGGGCCCCTCCCCGCCTTAGGCTTCACGCGTTCTAGCTTCTATGCTCAGATCCCAGGCCTGGCCTCTAATCTGGCTGCCACTTTGCCCTGTGGCCTCTGACTCTGTCTTTAATGCCAAGCCTAAGCCAACCCTCCACGGCACTGCTTGTCAAAGTCCCTTATAGGGTGGCTCCTGCTGGGAAGCCACAGGCCCAGGCCTTGACCGGGGTTTGGCGGATGCAATAGGAAAGTTTAATGAACAACAAGGGGACTTAGGAGACAGAGGTTCCTGACTCCTTGATGTCCTGTCTCCCAG
Seq C2 exon
AACTGCTTGTTTGACACGTGCAACTGTGAGAATAGCGAGGACTGCATGTGTGCCGCCCTGTCCTCCTACGTGCGTGCCTGTGCTGCCAAAGGCGTGCTGCTCAGTGGCTGGAGGGGCAAAGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(37.8=96.9)
A:
NA
C2:
PF087426=C8=FE(51.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTCGCTCGGGAGTGG
R:
TTTGCCCCTCCAGCCACT
Band lengths:
215-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]