HsaINT1023985 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1232450-1232770:+
Coord C1 exon
chr11:1232450-1232544
Coord A exon
chr11:1232545-1232643
Coord C2 exon
chr11:1232644-1232770
Length
99 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
GATGCCTCCCACCTCCGCAGAAC
3' ss Score
9.61
Exon sequences
Seq C1 exon
AGAACTACGCCCGGCACTGGTGCTCGCGCCTGACCGATCCCAACAGTGCCTTCTCGCGCTGCCACTCCATCATCAACCCCAAGCCCTTCCACTCG
Seq A exon
GTGAGAGGCTGAGGCCAGACCCCCACGCCTGGGCAGGATGGGTGGGGGAGCCCTGGCAGGCTGGGGTCCCTGACGCCCCGATGCCTCCCACCTCCGCAG
Seq C2 exon
AACTGCATGTTTGACACCTGCAACTGTGAGCGGAGCGAGGACTGCCTGTGCGCCGCGCTGTCCTCCTATGTGCACGCCTGTGCCGCCAAGGGCGTACAGCTCAGCGACTGGAGGGACGGCGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(41.3=96.9)
A:
NA
C2:
PF087426=C8=FE(56.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCAACAGTGCCTTCTCG
R:
CCTCCAGTCGCTGAGCTGTA
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains