DreINT0099038 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8290677-8292305:+
Coord C1 exon
chr25:8290677-8290771
Coord A exon
chr25:8290772-8292175
Coord C2 exon
chr25:8292176-8292305
Length
1404 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TAATCTGTTTTTCTCTGCAGAGG
3' ss Score
10.22
Exon sequences
Seq C1 exon
AGAAACTTGCCAAAGACTGGTGCTCCCGCCTTACAAATCCAAATGGCACCTTTTCCGAGTGTCACTCAGAAATATGTCCTGAGATGTACTACCAA
Seq A exon
GTAAGTCATCCTGCAGAAATGTTTAGTTTCCTTTTAAATTTACTTTGCGGTTGTGTTCACTGGCCACCATAAAATCAAATAATAATAGAAAATTGTCCTAGAAAAAGTATAAATTTTTTTTTCGTTAATGTGCCCTTCCTAATCTTCAATCAAAACAAATTCTCCTCCTTTTCATGCAACATCGTCTCTTTCTCTGATGATTTGTTTTTAAGTGAAGTTTGTTTATAAACTCATTTTGAGAGGATCACATGCTTATGATTGATCACAGCTGGTCCTGCATTACCCAATTTATTATTCACCAGTCAAACGATTCCTGAGTCTCCTAAACCTAGTTCCATACCATAGTCATCTTCATTTTGAAGAATCCCCCCTTCCTCCTCTACTCCTCCTCCTTTCATAGATGGGTTGCACGGCGGTCCAATGGTAAGCACTGTTGCCCCACAGTAAGAACATTACTGGTTCTAGTCCTTGCAAACAGGAGGGAGTCTCGGGCTCGAGGATTCTATGAGCTCAGAGCCAGGGGCGGACTGAGACAAAAAATCAGCCCTGGCACTGTAGCCACACCAGGCCACATTACCACACCGACACAGCCCCACCCACAGACACGCACGTTCACTACTTATATTGGTCTACAGATGGTGAAATAATACAAGCAATACCATATGTAATAGATATGTAAACATTTAATGTATGTGAGTGGAACAAAAACAACCCATTTATAACAAATTTATACATGCATTCATTTCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCTGGGGTTGCCACAGCGTAATGAACCGCCAACTTATCAAGCATATGTTTTAGAGTGATTTTTTTTTGCTTTCTCTGAGCCAGATTTTTTTTACGTCCACGTAACCTCTGATTTAGGTCGGATTGGGTCAGCCCATCTCGAAACCAGCTGACCATTGCCGATTGGGCCAAATGCTTAACATTTATTATTATTACTGATCATCATCATATTCACATCTTGCAAGAAATAAAATCTGCCTGCATGTAAAAACAATACATACAAAAAGTTTTTTTTAAAGGAAACTGACTGGCCCACATTTTTAAAAGATGGTCCAGCCCTTCTGGCATTTGCCAGAATTGCCCGATGGCTAATCCGCCCCTGTTTAGAACTCTCTCTCGGGACAGCAGGCAAAACATGCTTTATAATCAATCATCAGCTAAGTGTGAACTCTAGATAGTGTGAACAACATGACATGAGATCAACCAATATCAAACCACAACCATCCAAACACGATGTACAAAGTCAAGCTACCCGCCTTCTATTTTCTAGAAAGGAACATGAAACCATTTACCTCATAATAGGGAAGACTATCACACCTTCCATTTTGTGTGAAGTTAAATTCTTTTAATCTGTTTTTCTCTGCAG
Seq C2 exon
AGGTGCGTCTATGACACCTGCAAGTGTTCAGACATTAGGAAGTGCATCTGTGCAGCCGTGTCCACCTATGCCCACGCATGTGCCGCCAGAGGAATCATTCTCCACGACTGGATGGATACAGAGCCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(40.8=96.9)
A:
NA
C2:
PF087426=C8=FE(56.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGACTGGTGCTCCCG
R:
ACAAGGCTCTGTATCCATCCAGT
Band lengths:
215-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]