DreINT0099731 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7469561-7469927:+
Coord C1 exon
chr6:7469561-7469669
Coord A exon
chr6:7469670-7469795
Coord C2 exon
chr6:7469796-7469927
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
CATTGGATCCATGTTTGCAGGTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
GGCCTTCGCTAAAAAGCAGCAGCAGCTAAGTGCTTTGAAAGTCCTCCAGAGAAACTGCGCTGCTTACCTGAAACTGCGCCACTGGCAGTGGTGGAGACTCTTCACTAAG
Seq A exon
GTTGGTCTAGGTTGATATAATTCTTAGGATGGTTTGACCAGCTAAATCTATGTGGTTGTCCTAACTTATTTGCATTATTTTTGTAGATGTTTTTAATTGAGACATGCATTGGATCCATGTTTGCAG
Seq C2 exon
GTGAAACCCCTCCTCCAGGTGACCCGCCAGGAGGAAGAGATGCAGGCCAAGGATGAGGAGCTTATTAAAGTGAAGGAGAGGCAGGTTAAAGTGGAAAACGAGTTGGTAGAAATGGAGAGGAAACACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(16.7=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGCTAAAAAGCAGCAGC
R:
CTGCTGGTGTTTCCTCTCCAT
Band lengths:
239-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]