GgaINT0127251 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1709045-1709367:-
Coord C1 exon
chr18:1709259-1709367
Coord A exon
chr18:1709177-1709258
Coord C2 exon
chr18:1709045-1709176
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTGGTTTTAAATCTTTGTAGGTG
3' ss Score
8.22
Exon sequences
Seq C1 exon
GGCCTTTGCAAAGAAACAACAGCAACTGAGTGCACTGAAAATCCTGCAGAGGAATTGTGCTGCATATTTAAAGCTTAGGCACTGGCAGTGGTGGAGGGTCTTCACAAAG
Seq A exon
GTTTGTTATGTTCTGTCACTTTCTCTGACTTACGTAAATAAGTGAATGCAGATTCTCATGTGTTGGTTTTAAATCTTTGTAG
Seq C2 exon
GTGAAGCCTCTTCTTCAGGTGACTCGCCAGGAAGAGGAACTTCAAGCCAAGGATGAAGAACTAATGAAGGTTAAAGAAAAACAGACAAAAGTGGAAGCAGAACTTGAGGAAATGGAAAGGAAACATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGGAATTGTGCTGCAT
R:
TCCTCAAGTTCTGCTTCCACT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]