RnoINT0096314 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55376676-55377005:+
Coord C1 exon
chr10:55376676-55376784
Coord A exon
chr10:55376785-55376873
Coord C2 exon
chr10:55376874-55377005
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GAACTTTTACCTTGTCACAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGCCTTTGCCAAGAAACAGCAGCAGCTAAGTGCCTTAAAGGTCTTGCAGCGGAACTGTGCGGCGTACCTGAAGCTGCGACACTGGCAGTGGTGGCGCGTCTTCACAAAG
Seq A exon
GTGGGCTGAGCCAAGGGCCTCCTTCTGCATGGCGCCCGGATCAGCAGGAGATGCAGCTGTAGTAGTGATGAACTTTTACCTTGTCACAG
Seq C2 exon
GTGAAGCCTCTCCTCCAAGTGACCCGCCAGGAGGAGGAGCTCCAGGCTAAAGATGAGGAGCTGCTGAAGGTGAAAGAGAAGCAGACAAAAGTGGAAGGGGAACTTGAGGAGATGGAACGGAAGCACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGCCAAGAAACAGCAGC
R:
ACCTTCAGCAGCTCCTCATCT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]