DreINT0099746 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7488856-7491145:+
Coord C1 exon
chr6:7488856-7489017
Coord A exon
chr6:7489018-7491016
Coord C2 exon
chr6:7491017-7491145
Length
1999 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ACATCTCTCTTTTCAACCAGGCT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGCGTGAGATGGAAGCAGAGCTGGAAGATGAGAGGAAGCAGAGAGCTCTTGCTGTTGCTGCAAAGAAGAAGCTGGAGATGGACCTGAAAGATGTGGAAGCTCAGATTGAGGCTGCAAACAAGGCCCGCGATGAAGCCATCAAACAACTACGAAAACTCCAG
Seq A exon
GTAAAATCTTTTCCTGAATGTTGCAGTTTAGAAATGTGATGACGCTGTAATGACCGTGAAAGTAATGACACAAAAAAGGATTTTAGACAACCACACTGCAATGGATTTGGTTCAGTCTGCAAAAGTTTAACATTTGGATTCTGACGGTATGATAGTTTGGATTAAAATATCACGATATTGTGATAACGGCTCTAAAATGTGTTCTTTTTAAATGTCTTTTAATTGAATAAACATTTAAAATATTTTAGTACAGTAAACATTAAAATAAATAATTGACTTTGACTGTTTTTATTAGTTTAAAAAGGTTTATTTACAACTTAAAAAGGCATCTTTTGGATATTTTTCTTTTCTTTGAATATGGACGATCCTTTTCTGCTGGAGATGCTGTTGCCCTAAAAAACTAAATAAAATGGTCGTAAAAAACACGTAAAAAAACAAAATGAAAAATTTGCATATACCATAGGAATGGTACGATAAAATAGAAAATTTTTGCAGTTTTTAAAACCTTGATTTTTACAAACTGTGGTAAACCTTGAAACCGGTTTTCATCCCATACCTTTTGTACTTTCATCCACACAACACTTTTTGTATAACGAGTAACAAAGTAGAAAAATCTCAAAATGCCATTCCAAGCGTAGCCATGTGGATAGACAAAGTGCCACTTTTTGTAAACGGTGACATCACAGCATCAAGTAACCAGAAGAAGCAAGAACGCTGCATGTAACTAGTGGCAACAACAATAAAGTCAGTTTACAGAGCTGTGTTAAATGTATTAATACAATTACAGCAAAACCTGGTAATGCTGTATTAACTATGAGGCATTCCACATTAAGTTACACGCATTCAGCATCATTCGTGTCTGTACTCGGTGCACTGAAGAAGGACTTGCTTGCTGCATTCTTCTTTGATTTGTGTGTCTGTGTTTGTTTACAGCACCACATATAGAGGTGGCTTGCAGTGGGGAAAATAGGTATTGAACATGTCATCATTTTTCTCAAAAAACATATTTCTAAAGGTGCTGTTGACTTTAAATTTTACCTGAATGTTAGTAATAACCAAAGAAATCCATATATGCAAAGAAAAAAAATCTAATTAGTTTACAAATGAAGTTACATGTAATAAAAAGAAATGACGCCAGAAGAAAGTATTGAACACATGAAGAAAGGGAGTTGCAGAAAGGCAGTGAAAGCCCAGACAGCAGCTGAAATCTCTTAGTAGTTCTTCAACATCCCTCTGCCCTTCCTCATTGTAAATGAATATTCGCTGCTTCAGTACAACATCTACATTATCAGGATGATTAAGATGTAACCAAGGTGGACATTTCAGCAAGACAATGATCCAAAACACAGCCAGGGAAACTGTCGAATGCTTTCAGAGAAAGAAAATCAAGCTGTGGAATGGCCAAGCCAATCACCTGACTTGAACCCAATATGAAATACAAAATAAATCTTAGATTCAATAGACAAGACCCACAGAACCATCAAGATTTTTACACTCTAATGAAGTCTCTGAAAAGCTCACAGCTGAGCAATTCATGTGACTTTATTCTCCATAAGTTAATAAATGTGTTTCAGTAGTTCAATACTTTCTTCTCGTGTCATTTCTTTGTTATTACACAGATTTAATCTCACAGATTTTTTTTTTTTGTTTAGTTTTATTTTGATGTTTGTATTGTTTGGGTTTTTACCAAAATCTGGTTTAATTCCATGTCAACAGCTCCTTCAGAAATATTATTCCCAGGAAAAAAACACATGTTCAATGCTTATTTTCCCTGCTGTATGTGTTGTACCGTTTTTAACCCAGTTTTTCCGTTTACAGCTGAACACTGAGATTTCTTGAAGTGATACATGTATGCATGCGAACATTTTACAGAATCCGTAAAAGACAACAAAACATGATCGTTGCTGTGTGGACGTAACCTTAAAAGCTTGTCACCGCTGCATTAGTCTTGGTCCAAAATGCGAGACGTATAGACGACAACATCTCTCTTTTCAACCAG
Seq C2 exon
GCTCAGATGAAGGACTACCAGAGGGAGCTGGAGGAGGCACGCACTTCACGAGACGAGATCTTCACTCAGTCTAAAGAGAACGAGAAGAAGCTCAAGAGTCTTGAGGCTGAGATTCTGCAGTTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGTGAGATGGAAGCAGAG
R:
GCAACTGCAGAATCTCAGCCT
Band lengths:
286-2285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]