MmuINT0103240 @ mm10
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68807125-68808921:+
Coord C1 exon
chr11:68807125-68807286
Coord A exon
chr11:68807287-68808792
Coord C2 exon
chr11:68808793-68808921
Length
1506 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCTTTCTTATTTAACCTCAGGCA
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTGCGGGAGCTCGAGGCAGAGCTGGAGGATGAGCGGAAACAGCGGGCACTGGCTGTGGCGTCAAAGAAGAAGATGGAGATAGACCTGAAGGACCTGGAGGCTCAGATCGAGGCTGCGAACAAAGCCCGGGATGAAGTGATCAAGCAGCTTCGCAAACTTCAG
Seq A exon
GTAGGGATGGCAGGCTTACCTTGGTGGGACAGGCCACATAGCCTTACTGGAACCAAGATGAAACTGAAGCTGGAAGACCATGCAGCACCCAACTGTCACCTTGTCACCGAGCCACTGTCATGATGAGGACCAGAGCAGCTGTCCCCTAGGTTACTGGGTTTTCTTTTGAGTCAGAGCTGGGGATGGTGGCCAGGAGGAGTGTCCTTGCTGGAATCTGGTCCTGTGCCCCTAAATGCCCTTAGCAACAACTTCACTGTCTAGCTCTGTCTCCAAAGGGAAGTGGTGTCCCTTTCCTCCTGCACTGCTGGGAATGTAATTTTCAGACAGCTGCAAGCATCACTCTTGCTACCTGGATGATACAGTTCTATAGCCTCGCTGAGAAGAGGAGCGGTATGCATGATAAAGTACGGTGTGGGCTGACCCTGCTCTTCCTGGCTGGGTGTAGGCACTGATGGGAAAGGAAAGAGGTGTAAACTGTGACCAAAACTTCAGAAAAATCTTTCCTTTAACTTCATAATTCTACATCTTCATGCATCCATTCAACATCTTAGCCAAGGCAGGACTGTGCATGAACAGCCCCAGGATGAAGGAGATGGCAGTGGTGATTTGCTCAGAGCTGCACACATGCACAGCCGCAGGGTTAGGAGCAGAGGGTCCACTTTTGTGTGCTCTCTAAAGCTGGCGATGGCTGACCTTAGAAGAGCACTTGCTGCTCTTGCCCAGGACCAACCCAGGTTGGGTCCCAGCACCCACTGCATGGTGGCTCTCGTGCTGCCCTCTACTGGCCTCCGTGGGTACTGCATTCGTGGTGCATCGGCATACAAACTGGCTAAACACACACACACATACAAAATTTTAAATTTTTGAAGCTGAATTCAAACTTTTATTTTGACTTGATAATTACAAAAAATATTACTCATTACAAAAATATAATGCTGAATGTGTTTAATAGCTGTTTATCAGATATTCCCAGGTCACAGAATCTGTGTCCTTTTGCTTTGGGATGCTTATCCTGAGTTGGACTCTCAGCTCTAATCACACTCTCCGTCCTCCTCAGTCATGCTCTAGCTCGTTTCTCCAGTGCCTGTCACTGAAGCTGGAGTTCAGATGCAGCCAGGAGATGTCTGGCCAGCAGGCCACAGAGATCCTCCTGTCTGTTCCCCAGCCCGGGGACTCCAGGCTCAGCCAGCTTTTGTGGGTGCTGGGAATCCAAACTTTACCTTCATGTTTGTGTAGCAGCGACTCTCACAGCTCGCCTCTCGCCCTTTGAACTTCAGGATTAAGTAGAGACTGAGGTTGGACATCCCTATTTGATGATCTGTCTGTCGGGGGAAACATACATTAAAGCTTCATTTTCTTCATAGCTGGTTGAATTTTTATAATGAAAAGGTGATTATATCAGATGCCACTACTGTAGCTAACTAAGTGATACAGTTGTGTGAATGCATTTGTGCAATTCTGAGAATAAACGTCACTCCCTGAAAGGCCTTTCTTATTTAACCTCAG
Seq C2 exon
GCACAGATGAAGGATTACCAGCGTGAACTAGAAGAGGCTCGAGCATCTAGAGATGAGATTTTTGCTCAATCCAAAGAAAGTGAAAAGAAACTGAAGAGTCTAGAAGCAGAAATTCTTCAGCTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900:ENSMUST00000102611:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCTCGAGGCAGAG
R:
CTCTTGCAGCTGAAGAATTTCTG
Band lengths:
288-1794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types