RnoINT0096329 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55396522-55399347:+
Coord C1 exon
chr10:55396522-55396683
Coord A exon
chr10:55396684-55399218
Coord C2 exon
chr10:55399219-55399347
Length
2535 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTTTCTTATTTAACCTCAGGCA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GTACGGGAGCTCGAGGCAGAGCTGGAGGATGAGCGGAAGCAGCGGGCACTTGCTGTGGCTTCAAAGAAGAAGATGGAGATAGACCTGAAGGACCTGGAGGCTCAGATCGAGGCCGCCAACAAGGCCCGGGATGAAGTGATCAAGCAGCTTCGCAAGCTTCAG
Seq A exon
GTAGGAACGGCAGGCTTGCCCTGCGGGACAGGGTCACATGGCCGTACTGGAACCAAGATGAAACTGAAGCTGGGAGACAATATAGCACCCAACTGTCACCTTGTCACCGAGCCACTGTCCTGCTGAGGACCAGAGCAGCTGTCCCCTAGATTATTGGATTTGCTTCTTAGACAGACCTGGGGATGGTGGCCAAGAGAAGTATCCTTGCTGTAATATGGTCCTGTGCCCACAAATACCCTTAAGCAACACATAACTGTCCAGCACATCTCCAGGAGGAGGCAGAGTGTGCCTTTCCCCTGCGCTGCTGGGAATGTAATTTCAGACAGCTCCAAGCATCACTTTTGGTACCCATATGATACCATTTTATGGCCTCGATTGGGAGAGGGCTGTTATTCATGCTAAAGGCCAGCGTGGGGTGGCCCTGCTCTTACTAGCTAGGTATAGGCACCGGTAGGAGGTACAAACTGTGACCAAACCTTCAGAAAAAAATCTTTCCTTTAACTTCATAGTTCTATATCTTCATGCATGCACCCAACAACTATGATCTTAGCCAAAGCCCAAAGACTGACAGAGCTGTGTGGAAGTCGCAGGATGAAGGGAGCACCTGACAAAAGAAATGGTGACTGTTGCTTACAGCTGCACACATGCAAAGCGTCTGTGGCCAGCAGCTTTATAAGCCAAGGAATCACTTTTGTATGCTTTTTGTATGCTGGCGTGATGGCTGAAGTTTATAACAAGGGCACCTGTTGCCCTTGTCCAGGACCAACCCAGGTTTGGTTCCCAGCATCCACCCACATGGTGGCTCACATGCTGCCCTCTTCTGGCCTCCATGGGTACTGCATTCACGAGGTACATCAGCATACAAACAGGCAAAACACTCATACACGCAAAATTTAAAAATTTTGAGGCTAATACAAACTTTTGGCTTAATAATTACAAATATTTCTCATGATGAAAAGTAATACTGAATGTATTTAATAGCTGTTTATCAAGATAGTCACGCACCACAGGATGTGTGTTTCCTTTGCTTTGGGATGTTTGCTTATCCTGAGCTGGACCCCGGCTCTAATCTCACTCCCCCAATTATGAGCACTTGCACATGCGTAGAGGCTAGAGGTCAGCGCCCTCCTCAGTCGTGCTCTACCTTGTTTCCCAGTGCCTCTCTCTGAAGCTGGAGCTCAGATGCAGCCAGGATAAACAGCTGGCCAGCAGTTCCCAGCACTGGGACTACGTGCCCTCAGTCAGCTTTTGTGGGTGCTGGGGATCTAAGCTTTAGTCTTGATGTTTGTGTGGCAGACACTTTAACAGTTAGGACCCCAGCCCCTCGAATTGTGCTCGATTTGCTTTGAAATACCATGACCAAGAAGCAAGCTGGGGAGGAAAGGGTTTATTCGACTTACGCTTCATCATTGAAGGAAGTCAGGGCATGAACCAGGAAGCAGGAACTGAAGCAGAGGCCATGGAGGGATGCTGCTTACTGGCTTGCTCCCCATGGCTTGCTCAACCTGCTTTCTTATAGAACCCAGGACCACCAGCTCAGGGGTGGCCCCACCCTAAATAGGCTGGGCCCTCACACATTGATCACTAATGGAGAAAATGCCCTACAGCCTTATCTTATAGAGGCATTTTTCCTTCCTCTCTGATTACTAGCTTATGCCATGCTGACAAAAAACCAGCCAGTACACTAATGGCACTGAACATGTTTACAGAAGCACACGTAAATGCCAGTTCATCCCGCCTGTGAATCTTTTCAGTTGCACTGTCTTTCAGTGATTTACTTGGACACTACAATTCTGTATATACTCTGGCTGGTGTTTGTTTTGTTTTGGTTTTTGTTTTTTTTTTTTAATTTATTTAATGTATATGAATACATTATAGCTGTCTTCAGTTACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCTGGACCTCTGAAAAAGCAGACAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCTGTATCTATCAGTCAATCTTGCCAAAGTCATCTACTAGCTGTGATGGCTTTTTTACTAGGTCCCTTAAGATTGCCTAAGCGAAGATCATGCCATAAACCCACTTTGTCTACTCCTTCCTTCTTGGATTGGCTTCTTGTTGTCGAATTACCTGGGCTGGGCTCTGCATGTCAGGGTTAAGTAGAGACTGAGATTGGACGTCCCTACTTGATGATCTGTCCAGCAAAGCATACGGATTAAAGCCTCATCTTCTTCATAACCCATCAAGTGTTGTGATTAAATCAAATGCCGCTCTGCAGCTGATGAGGTGATGCGGTGTATAGGACAGGTGGGTGGCAAACGCGCTCGGTCACGGTACAGACTCCATTCCATTCCAGCACTGGTTAGTTCCTGTTGAGGGATTTACATGGGATATCAGTCTGGTCTTCTGGGAGCTTTGTACTTCTGTGTTCTTTTTACAGTGAAACAATACTGAGAATAAAAACTACTCCCTAAAAGGACTTTCTTATTTAACCTCAG
Seq C2 exon
GCACAGATGAAGGATTACCAGCGTGAACTAGAAGAAGCTCGAGCATCTAGAGATGAGATTTTTGCTCAATCCAAAGAAAGTGAAAAGAAACTGAAGAGTCTAGAAGCAGAAATCCTCCAGTTGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]