DreINT0099749 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7493833-7495342:+
Coord C1 exon
chr6:7493833-7493956
Coord A exon
chr6:7493957-7495133
Coord C2 exon
chr6:7495134-7495342
Length
1177 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGCTGTGTGTGAATGTTCAGGTG
3' ss Score
7.18
Exon sequences
Seq C1 exon
GGCAGCCCTGTTGGATGAGAAGAGGAGACTGGAGGCTCGTATCGCTCAGCTGGAGGAAGAGCTGGAGGAGGAACAGAGCAATATGGAGCTCCTGAACGACCGCTTCCGCAAGACCACTATGCAG
Seq A exon
GTGTGCAGTGCTCAGAACCCTGCTGTCATTATGAGCAATGTATTTGCAAAACTCTGCACCCTTGTGAGCTTTCTGTAGTTGGTGCAGAGAGCAAGCCCATGTAGGCCTGTCACTATAATCACTATATCGACTCATTGCACAACACATAGGCATGAGCTCAATCATTTTTGGTGATGTAATATATATATATATATATATATATATATATATATATACACAGTTGATGTCAGAATTATTAGCCCCCTTGAATTATTAGCACCCCGGTTTATTTTTTTCTCCAATTTCTGTTTAATTGAGGGAAGATTTTTTCAGCACATTTCTAAGCATAATAGTTTTAAAAACCTGTTTCTAATAACTGATTTATTTTATATTTGCCATGATGACAGTACATAATATTTTACTTGATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATAAGATGAACTAGACAGGTTAGGGTAATTAGGCAAGTTATTGTATAACGATGGTTTGTTTTGTAGACTATCGAAAAAAGAAATTGCTTAAAGGGGCTAATAATTTTGTCCCAAAAAGGATTTTTAAAAAATTAACGGCTTTTATTCAAACCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATCCGACATACTGTGAAAATTTCCTTGCTCTGTTAAACATAATTTGGGAAATGTTTAAAAATGAGAAAATAATTCAAAGGGGGGCGAATAATTCTGACTTAAACTGTATATATCCCATAGATTAATATCAACTCTAGTCACATATTAGCTGACTGTGTTTTACTGGAGGTGTCAGTGGGTTTGGTTAAAAAATACTTTAGTATTTACTGTAAATTACTTTGGTATACTTTCATGTGGGTGAGTGATGAATGACAATAGATCTAGTGGCAGATATGGCAGCCTCTATTACTTTTTAGCTTGCACTTTTTGTTAACATTCATTATTATTTATTAGTTCAGGATATATGTGTTTTCAATCATAAACAGATGTATCAATACAATGTTAACATATGCTTTCTCTGTGAATTTATATTTTAAGTTTTTACTCCGAATGTCTCATCCAAAGCGTTGGAATTGCTCTGTAGTTCTGATCTTTGTAAGTGTTTAGATGTTTAGTGAGAGCTGCTGTGTGTGAATGTTCAG
Seq C2 exon
GTGGACACCCTGAACACAGAGCTGGCAGGAGAGCGCAGCGCTGCACAGAAGAGTGAGAACGCACGTCAGCAGCTCGAGCGCCAGAACAAGGACTTAAAATCCAAGCTGCAGGAACTCGAGGGATCCGTCAAATCAAAGTTCAAGGCCTCTATCGCCGCCCTGGAGGCAAAGATCCTCCAGCTAGAGGAGCAGCTCGAACAGGAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTTGGATGAGAAGAGG
R:
TTTGCTTCCTGTTCGAGCTGC
Band lengths:
329-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]