MmuINT0103243 @ mm10
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68811601-68812005:+
Coord C1 exon
chr11:68811601-68811724
Coord A exon
chr11:68811725-68811796
Coord C2 exon
chr11:68811797-68812005
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
3' ss Seq
TGACCTCCCTCCTCTTGTAGGTG
3' ss Score
12.85
Exon sequences
Seq C1 exon
GTCTGCGCTGTTGGATGAGAAGCGGCGCCTGGAAGCGCGGATCGCACAGCTGGAAGAGGAGCTGGAGGAGGAGCAGAGCAACATGGAGCTGCTCAATGACCGCTTCCGCAAGACCACGCTGCAG
Seq A exon
GTGCCATGCGGCCGGCCCTGGGGGCAGCAGCATTGCCCCTGCACAGGTTATCTGACCTCCCTCCTCTTGTAG
Seq C2 exon
GTGGACACACTGAACACAGAGCTGGCAGCAGAGCGCAGCGCTGCCCAGAAGAGTGACAATGCCCGCCAGCAGCTGGAGCGACAAAACAAGGAGCTGAAGGCCAAGCTGCAGGAGCTGGAGGGGGCAGTCAAGTCCAAGTTCAAGGCTACCATCTCAGCCCTGGAAGCCAAGATTGGGCAGCTGGAGGAGCAGCTTGAGCAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900:ENSMUST00000102611:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGAGCTGGAGGAGGAG
R:
AGCTCCTTGTTTTGTCGCTCC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types