GgaINT0127268 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1692407-1692834:-
Coord C1 exon
chr18:1692711-1692834
Coord A exon
chr18:1692616-1692710
Coord C2 exon
chr18:1692407-1692615
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGTTCTCCTCCATCTGAAAGGTT
3' ss Score
7.08
Exon sequences
Seq C1 exon
GTCTGCGCTGCTGGATGAGAAGCGCCGGCTGGAGGCTCGCATTGCACAGCTGGAGGAGGAGCTGGAAGAAGAGCAGAGCAACATGGAGCTTCTCAACGAGCGGTTCCGGAAGACCACACTGCAG
Seq A exon
GTGAGCTGTTGGCAGTTGCTATCAGGACAGCTCATGCTTGGGTTGAGTGGAGGCTCTGAATAGCACCAAATGATCCGTTCTCCTCCATCTGAAAG
Seq C2 exon
GTTGACACGCTGAATTCTGAGCTGGCCGGGGAGCGGAGCGCTGCACAGAAGAGTGAAAATGCACGGCAGCAGCTGGAGAGGCAGAACAAAGAGCTGAAAGCCAAGCTGCAGGAGCTGGAGGGATCTGTGAAGTCAAAGTTCAAGGCAACAATTTCTACTCTAGAAGCCAAGATTGCTCAGCTAGAAGAACAGCTTGAGCAGGAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCAACATGGAGCTTCT
R:
TTCACAGATCCCTCCAGCTCC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]