DreINT0099823 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36545112-36545407:-
Coord C1 exon
chr3:36545279-36545407
Coord A exon
chr3:36545201-36545278
Coord C2 exon
chr3:36545112-36545200
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CAATACCAATCCCTTTATAGGAA
3' ss Score
7.39
Exon sequences
Seq C1 exon
ACTCAGATGAAAGACTACCAGAGGGAGCTGGAAGATGCTCGAGCATCCCACAAGGAAGTTCTTTCCGATGCTAGAGAATCTGAGCGAAAGGCCAGAGCTATGGAGGCCGAAATCTTACACTTGCATGAG
Seq A exon
GTAACATAATACCACATTTTTTTACTGCAATGTACTTAAATTACTTCCCATACAACGGCAATACCAATCCCTTTATAG
Seq C2 exon
GAACTTGCTTCAGCAGAGAAAGCTCGCAAACATGCTGAAAGAGAGAGGGATGAGATAGCAGGGGAGATGGCAAGTGGTTCCTTCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGAGCTGGAAGATGCT
R:
GCCATCTCCCCTGCTATCTCA
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]