HsaINT0107526 @ hg19
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin, heavy chain 11, smooth muscle [Source:HGNC Symbol;Acc:7569]
Coordinates
chr16:15813077-15813570:-
Coord C1 exon
chr16:15813442-15813570
Coord A exon
chr16:15813166-15813441
Coord C2 exon
chr16:15813077-15813165
Length
276 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CCTTCCTCCCTCCCACCTAGGAC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GCTCAGATGAAGGACTTTCAAAGAGAGCTGGAAGATGCCCGTGCCTCCAGAGATGAGATCTTTGCCACAGCCAAAGAGAATGAGAAGAAAGCCAAGAGCTTGGAAGCAGACCTCATGCAGCTACAAGAG
Seq A exon
GTAAAGCCTCGCCTTGCTAGGAGAGCCTCAGATGCGGGTGTCACGGTAGCACCCCTTGGCAGCTCCAGTCTGTGCATTCCCAGATTTCATTTCGTCCTCCTCTGGGGTCCACCTGTCTAGAAAGACACACGCTTCCCTCCTCTATGTATTCACGGGGCCTCCCCTGAGCTCAGAGGAAGAACATGTACTTTCAAGGGTGGCTGAGTTGTCAGGGTGGACTCTTGGTGGGGCTTGGCCTTTCCCTGGCAGACAACAGCCTTCCTCCCTCCCACCTAG
Seq C2 exon
GACCTCGCCGCCGCTGAGAGGGCTCGCAAACAAGCGGACCTCGAGAAGGAGGAACTGGCAGAGGAGCTGGCCAGTAGCCTGTCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392-MYH11:NM_001040113:36
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTTCAAAGAGAGCTGGA
R:
GCTACTGGCCAGCTCCTCT
Band lengths:
197-473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)