RnoINT0096370 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:849800-850239:+
Coord C1 exon
chr10:849800-849928
Coord A exon
chr10:849929-850150
Coord C2 exon
chr10:850151-850239
Length
222 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
GAACCTCTCTCCTGCTTTAGGAC
3' ss Score
10.07
Exon sequences
Seq C1 exon
GCTCAGATGAAGGACTTCCAAAGAGAGCTGGATGATGCCCGTGCCTCCAGAGATGAGATCTTTGCCACCTCAAAAGAGAATGAGAAGAAAGCCAAGAGTCTGGAGGCAGAGCTCATGCAGCTCCAGGAG
Seq A exon
GTATAGGTTTGCCCTGCTGGCAACAGCCACTCACATTCCTGGTGGGACCCACACTGGTTCCTCAGGCCTAGGCACCCAAATTTCCTTCCTTTCTGTCAGCTTTTGTCTGAATGAGCGGACCTCCCTCATACAAAGAGCAAGTGGAGCCTCCCTGAGCTCAGAGGGGGAGCTGCACTTCATCTGTGTAGGAGCAGGATAGCCAGAACCTCTCTCCTGCTTTAG
Seq C2 exon
GACCTGGCAGCAGCTGAGAGAGCTCGCAAGCAAGCTGACCTGGAGAAGGAGGAGCTGGCTGAGGAGCTGGCTAGCAGCTTATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATGAAGGACTTCCAA
R:
TCCTGATAAGCTGCTAGCCAG
Band lengths:
216-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]