DreINT0099910 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24969791-24970037:-
Coord C1 exon
chr11:24969974-24970037
Coord A exon
chr11:24969890-24969973
Coord C2 exon
chr11:24969791-24969889
Length
84 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GTAAAAAAAAATGATGACAGATC
3' ss Score
-0.62
Exon sequences
Seq C1 exon
GGTAAGTTCATCAGGATCCATTTTGGACCAACAGGGAAACTGGCCTCTGCTGACATTGACATAT
Seq A exon
GTAAGTGATATTTTAAAAAATGATGTGAAATAAACACTATAAAAAGTAAAAAACTAATGAAAATGTAAAAAAAAATGATGACAG
Seq C2 exon
ATCTTCTGGAAAAATCCAGAGTGATATTTCAGCAACCTGGAGAGCGAAGTTACCACATCTACTACCAGATCATGTCACAAAAGAAGCCTGAACTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAGTTCATCAGGATCCATTTTGG
R:
AAGTTCAGGCTTCTTTTGTGACA
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]