RnoINT0096587 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151132663-151133480:+
Coord C1 exon
chr3:151132663-151132726
Coord A exon
chr3:151132727-151133381
Coord C2 exon
chr3:151133382-151133480
Length
655 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
3' ss Seq
TAGTACTCCTTTTTCTGCAGATC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GGCAAGTTCATCCGCATCCACTTTGGTCCCACTGGGAAGCTGGCCTCTGCGGACATTGACAGCT
Seq A exon
GTGAGCCTGGGAGAAGGCAGGGGAGGTGTGGGAGGAGGGAGTGGCTGCACTGAACAAATTCTTTGGCTTCCCTCTGCTCTGGCCATTTCTCTCCATCTTCCCACTTAAGTCCACTTTACCCATCAGACTGGCCCCCTGGTCTCTACTCTCCTGCTCTGTCTATGGTCTGTAGTTGACCATTTCCTGTCCCTGCTTCTAAGCTCCTCTGAGGAGCCAGGGAGAGGACTTGGGAGTACAGCCTTGATGTGCTTTACAAAGACCAGAGTTCAGACTCCCCAGAACCCATGTAAACACTGCTGGCCCACTTGTAATCCCAGCCCTCGGGAGGCGAGAGACAGGGAGTCTTAAAGCAAGGGGCACAGTGAGATAGCTTCATCGGTGAGCTCTGGGTTCAACTGAGAGACGTCTGCCTCAATATATACAGTTAAGAGCAATGGAGGAAGACACCAGGGACCCCCACAGGGACAGACACAAGTCCCACACAGTGACATAGATACTGGGAAGGCACTTTCCAGTGTAGGCCTGCTCGTGCACAGACATGGGGACCTCCACACATGGCCCTCCCTCTCGTGGCTGCCACTTCCCTATCCCTGCACCATACTGGGGTCTTTGCCCCAGGGAAGAGATAAGCAGGCTAGTACTCCTTTTTCTGCAG
Seq C2 exon
ATCTCCTGGAAAAGTCTCGAGTGATCTTCCAGCTGCCCGGTGAGCGTGGTTACCATGTCTACTACCAAATCCTCTCCGGGAAGAAGCCAGAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]