HsaINT0107879 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33572869-33574001:+
Coord C1 exon
chr20:33572869-33572932
Coord A exon
chr20:33572933-33573902
Coord C2 exon
chr20:33573903-33574001
Length
970 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCAGCGTCCCTTCTCCCCAGATC
3' ss Score
10.46
Exon sequences
Seq C1 exon
GGCAAGTTCATCCGCATTCACTTTGGTCCCTCTGGGAAGCTGGCATCCGCGGATATTGACAGCT
Seq A exon
GTGAGTCAACCCCCTGCGGGCGGTGCAGGGGAAGGAGGCCTGAGCCCGGTCACCCCAACTCGGCCTCTGTCATCACGACTTCTGGGCTCCTGCCTGCTCTGGGCACTTCTCTCTACCCCCTGGCTGCTGCCCAGCTCAGGCCACCTCACCTATCACCAGAACATCACCCCAGCCTCTGCCTGGTCTCCAGCTTCCTCTCCTCTACGCGGCCATAGTTTTGCTGGTCATATCCTGTTCCTGCTTGAAAGCTTTCTCTAGATCCTGTCACCTGAGGATGGAGACCCAAATCCTCATTTGGCCAGTCAGGCTCCTGTGACTGCACCCCTAGCGTGTCCCCAGTCTTCTCTCTGGCCACCAAGAGGGCAGGCCTGGCCCACGGCCCTCCTGCCCCAGCTGCACAGCTACACGTAGAGTGCCCCATCCTTCCAGGCACCCCGCTGGGAAGTGCCCCAGTACCACCAGCTGCATAGACCCCAGGCGCCTAGGCCACACTCAAGGGGGCCAGGGACACAGAGGGGCCCCCACGTTGGCCACTCCCCACATTGGGCTGCATGGCTAGGTCTTGACGGATGAGCGCAGGCAGGCAGTGACGGGGACAGGGATAGGCTGTAATTCACACCCTGACCCCTACACAGACACACACAGACACACACGGAGGCTCGGCCACACACGCACACACGCTGACACACCAACAGATAAAAACCTGCACACGCAGACACCACACTCACCCCACACACACGCAAGGACACACACTGACCCATCTGGCCAGAGACACAGACACACAGGTACAGACACACGGCTCGTGTGATGACGCAGGCACAGGGGAGATACCCTCCCCACACAAGCTGGCAGGTGCAGATGCAGCCCCCCTGCACACTCCCTGCCCACCTCTCTCCCTCCGCATCGCCCCCTTGGGATGTCCACTCTGGGGAGGTGTGGGAGATGGCAGGCCAGCGTCCCTTCTCCCCAG
Seq C2 exon
ATCTCCTGGAGAAGTCGCGGGTGATCTTCCAGTTGCCTGGTGAGCGCAGCTACCATGTCTACTACCAGATCCTCTCAGGGAGGAAGCCAGAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)