DreINT0100856 @ danRer10
Intron Retention
Gene
ENSDARG00000074622 | myo5ab
Description
myosin VAb [Source:ZFIN;Acc:ZDB-GENE-050411-72]
Coordinates
chr25:7474553-7475262:-
Coord C1 exon
chr25:7475236-7475262
Coord A exon
chr25:7474664-7475235
Coord C2 exon
chr25:7474553-7474663
Length
572 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AACTTGATGTTTGCCTGCAGTTG
3' ss Score
7.11
Exon sequences
Seq C1 exon
ATGGCAGCGCCGGAGCTTTACTCGAAG
Seq A exon
GTATGAGAGTTTAATTCCTGCTACTTTCACATCTGTGCAATGGAAACATGTGAAGCCAAATGTGATCCAGACAGACCAAGCGTACAGCAGCTTTCCTGGCTTGTTTGGAGATTCACAGAGGCTTAATAGTATTTCAGTTTGAACATGTTTACTTGTATGTATTTGGTAAAGCTGAAAGAAAATGAAAAGTTAATTACATGACAGAAATATGAATGTATTGACCTCTCAGATACTTGATAAAAGTTGAAAGAAAATCAAATATATTATAGAGAGATTTGTCACTTTAAATTTAGGAAATATTTAAGAGTAAAACTAGACAAAATAGATACTGTTTTGTTTTAAAGGTGAATGCATTTATTTAAATATTTAATGCAGTTTTATTAAAGTTAAAAGAAAACAAAACAAAAGAAGCTGCAGTTCAAATGAAACCCATTGAGTTTATTGTTGATTGCTATAGTAAATCAATGAGATATTATATATAATAATCATTATATCAGTTGCATAAATTAGATCATTTTACATCTGTGTTTGAATGCCACTGATATTTAGACTAACTTGATGTTTGCCTGCAG
Seq C2 exon
TTGGCCCGAGTCTGGATCCCAGACCCTGCAGAGGTGTGGAGATCAGCAGAGCTCAGCAGAGACTACAGACCTGGAGATCCTGTCCTGCATCTACTGCTGGAGGATGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074622:ENSDART00000089034:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]