DreINT0101114 @ danRer10
Intron Retention
Gene
ENSDARG00000077201 | myo7bb
Description
myosin VIIBb [Source:ZFIN;Acc:ZDB-GENE-070912-482]
Coordinates
chr2:23258075-23258461:-
Coord C1 exon
chr2:23258321-23258461
Coord A exon
chr2:23258234-23258320
Coord C2 exon
chr2:23258075-23258233
Length
87 bp
Sequences
Splice sites
5' ss Seq
ATGGTATCA
5' ss Score
1.71
3' ss Seq
CTCTTTATTTTCCTCATCAGGTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
CAAGTTAACGAATCAAGGAGACAGATTTCCACTCTGAGCGGCCAGTTTCGCCAGTCTCTGGACTCTCTGATGAAGGCTCTTTCTCTCTGCCAACCCTTCTTCATACGCTGCTTCAAGCCAAACGATAAAAAGTTGCCCATG
Seq A exon
GTATCAATTCACTTCAACATCACTTACATCTTGAGCAGCTGTGAGGACGCTTTTAAGATGACGTTTTCTCTTTATTTTCCTCATCAG
Seq C2 exon
GTTTTTAACAGAGAGCTCTGCATGCAGCAACTTCGCTACTCTGGAATGCTGGAGACCATTCGAATACGCAAGTTGGGATATCCCATCCGTCACACCTTCAAGGACTTCCTGCATCGCTACCGAGCACTCTTGAAGTCCATTGACTGCGACCCCAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077201:ENSDART00000141621:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTTCTCTCTGCCAACCC
R:
AGTCCTTGAAGGTGTGACGGA
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]