DreINT0103031 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31896714-31898104:+
Coord C1 exon
chr5:31896714-31896832
Coord A exon
chr5:31896833-31898009
Coord C2 exon
chr5:31898010-31898104
Length
1177 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTTAAATGTTTCACTTGCAGGAG
3' ss Score
10.57
Exon sequences
Seq C1 exon
CTAATGTGCTATTCTTTGGCTGTCGATCTGAATCTAAAGACTTCTACTGTGGATCAGAATGGCAGGAGAAGGTGCAGGCGGGACAAATGATACTCGTCACAGCCTTTTCCAGAGATCAG
Seq A exon
GTCAGACCTGGATTATTTAGCTTTTACCTTAACCTTTTAACAGGCTTCCTGGTTGATCCTTTATCCATAGGGTATCATTAAAACAAACAAAAAACTTTCAAGAACTAAATTTAACAAAATAAATAGGTCCAAACTTTTGTTTAGAGTGCAAGTTAAAGGGATGGCTAATGACAGATGTGTCCAGTAAGGAAAACACCCAACATGTCCAGTGCTGGAAAAGCTTTGAATAAGAAAACCATGCCTAATCGTATTCTCCAGTATGTGTCACTTTTTTTAGCTGTCTGAAACATGCTGCACTTGTATTTCAAAGTGACTTTATATAATTCAATTAATCTGTGTAGTGCAGATATCGGAGAACTTTGTACATCTTATTCTTAGTTGACCTCTTTCGACAACAATTTTAACATTATATATAAAAAAATAGAAGAACACTTTTTTTGTTCTTCTCTTTTTTAGTTATTGTAAAGGATTTGTTGTGAAATGAGATATGTTTATAAATGTTTTCTCGAATATATCGCTACTGGTAGGCATCATGTGACCAATTTCTCAAATTAGAATTTAAAAAATGGGAAACATCAATTTGTGTTTGTGGATATTAATGAAGAAATTAATCAATATAATAATTGAAACATGATGTGCTCATTTGATTTTGCAGCATGTTGTTCTTTTAGAGGTTATACCTAGGGCAAGACGGAACCTGCAGACTTTTTTTGCTATTTCTTTGGAGAATTTTGTTAAAAGTCTGCGGATTTTTGAAGAATTATTTTGGGAGTATCACAACTAAAACCTTAATATGTGAAATAAAAAATAAGATCTTTTTAACTTTTATTTAATCATTAAAATGCAAATCCAATTAGATTCACTTTATATTGGTTAAACAAAGCAAGTCTCTCATATAATATCTCTACTAAAAGACAGGAAATATTACTTTACAAACTACATTGTACATAAATCAGATAAGCATTTTTACATTAGTCAATAATATTACTGTAATTAATTTAAAAACTAAATATTGATTTTCACACATTTACTCAAGTAAATAAACAGAATAATGATAAAAAATTGTCAGGCTAAAAAATTGTGGAAAATTTGCATAATTCTGCGCGCGCAGATTCTGTGTGGGTCTAGTTATACCTCATGGGATATATTGTAAACAGTTTAAATGTTTCACTTGCAG
Seq C2 exon
GAGGATAAAGTCTATGTTCAGCATCGTGTGAAGGAACAAGGCAAACTGTTATGGGATCTGATAGCAAAGAAGAATGCGTTCTTTTACATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGTGCTATTCTTTGGCTGTCG
R:
CCTGCTATGTAAAAGAACGCAT
Band lengths:
214-1391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]