BtaINT0100312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105884541-105884837:-
Coord C1 exon
chr11:105884719-105884837
Coord A exon
chr11:105884636-105884718
Coord C2 exon
chr11:105884541-105884635
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCCCGCCCGCTGCCCCGCAGGAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GAAATGTGCTGTTCTTCGGATGCCGCCGGCGGGACCAGGACTTCTACTGGGAGGCCGAGTGGGAGCAGCTGCAGGCGAGAGGCTGCCTGACTCTGGTCACGGCCTTCTCCCGGGAGCAG
Seq A exon
GTGTGTGTGGAAGGGCGGGGAGGGGCACGGGGCGGGACGCCCAGGGTGCAGACTCAGAGTGCCTCCCGCCCGCTGCCCCGCAG
Seq C2 exon
GAGCAGAAGGTGTATGTGCAGCACCGGCTCCGGGCGCTCGGGCCGCTGGTGTGGGAGCTGCTGGACGGCCGGGGCGCCCATTTCTACCTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTTCTACTGGGAGGCC
R:
CTGCCAGGTAGAAATGGGCG
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development