GgaINT0126438 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1353043-1356527:+
Coord C1 exon
chr17:1353043-1353161
Coord A exon
chr17:1353162-1356432
Coord C2 exon
chr17:1356433-1356527
Length
3271 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CTCAGCACTGTTTCCTGCAGGAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGAACTGCTTGTTCTTTGGCTGCCGCCAGAAATCCAAGGACTTCTACTGCCAAGCAGAGTGGGAAGAGCTGGTGACAAAGGGCTTCCTGATGCTTTTCACGGCCTTCTCCAGGGACCAG
Seq A exon
GTTAGTTCTTGGAGGAGCAGGTTGTACACAGAAGCATCTCAGCAGCACTGATGGGAGCCTGCCAGGGTTTTTGCCCGTGCCTGTGAAGGACCTGGTGGGGTGGCACGATGATCACCTCGCTCCCCTGCCCCACCTGGGTGCTGGCCAAGATTACCACCAGCAGCACAGGTGCCAATTTGTGACACAACTGGCTGTGCTGAGCTGGAAAGGTCACTGAGACGGAGCTGGCAAGTGCCAGAGCAGATAAGGTGTTAGCCAGCTTTGTTTGTCTGGACCACGTGAGCAGCTCCCAGGCCTCCTGGGGGTGGTGGAAGTCACCAGGCAATAACCTTTCTTGGTTGAATGCTGCCATCCCCACTGTGTCCCCTCTGATCACCAGCTGAAGCTGAATAGCTTGGCTTCCTGCCCCATTTCATGGTGCCGTTGTGCCAGCTCCCCAGAGCCTCAGCAGTGTAGGCAGAAGCTCCCAAGATGGAAGAGCACCCCACACCTCCCTTATTTCCCGGCCAGTGCCTTTGGTGGGCAACTCTCCCTCAGCCCCTCTCTGGGCTGCAAGATTTTTGAGTTGCAGGAGTAGCTCAGTGAGCTGGGACTGTTTGACTGCCTTGCCCGATGCTTTGATAGTATGCAAAACTCAGACTGGCTTTGAAACAGAGATATCTGATAAAAAGGGTCAGTGAGAATGGTGTTCCTAGGTAGCTTAGCTGTGCCAGTCCTTTTATCCTGGCTGTGTGTATGCACTGACATTAAGCCAGCATCTTTTATCTGGTCACTTGTAAAGCGTGAGTTGGATGCCTCTGTGAAGGCCTTCCAAGTCTTTGATTAACAGGAGTGGCACAGCAGAGGCTTTTTGGATGAGTACTCTGCCTTTTTTCCATTGGTTCACACAGTGGATGGGAGACGTACAGCTCCCCAAATCTGGAGGGCAGCCCCAGAGACTCTTCCTGCCCTTGCAGACTCTGGAGGGCCAGGACTTACAGCAGTGTGTTCCTCCTGGCCCCTCCAGCTTTGCAGATTTTGTGGCACAAAACAGATTGGGTTCTGCTGCTACTGTGTCCCTGCAGTTCCACTGGGGGACCTGCTCAGCAGCACGGCTAAGTGGGATGTGGAGCTGCTGTGCCTGCAGCTGTAGCATATGCCACAGATGTTAATTCATAAAAAATTTCTTTTTAAAGAGCCTGACAGGAGCTGGGATGCTCCATAGCTGAGCAGGATTTTCCTCTTCTTCTGTAAGGTTCCCTCTGTAGCGACCTTCTGTCACATCGTTTCTGCCCTGCAGAGCAGATTGATCCCTTCCTAATGCGACTGTTGCTAATTCTCAGCAGGATGCCCTGGGCTTTAGCTGAGACGCTGTGACCTGAGTTTGTCACTTGGGTGCTCTGGTTTCTAGGTAGCTGTAGGTCCATAAACGACCTGCTCAGAGCCCTGGCCTCATTGATAGAGCCTCTATCAGCACTTAGCTGATTAACGTTAATTATGCTGAAGTCGGGCTGCTGGCTGGCTGTTTTGGTGCTTGCAATGGGCTTACTTACCTCCTGCACCTCCTGTAGTGGGTCAGAGCCGTGGGGCTGTGCCCAGAGGTGACTCGACTCTCCTGTGCACTACTGCTGCTGGCACTGTGCGGGACCTGAGTGCCCTGTGACACCTCTTGGGACGGATGGGGCCAAGGCTCCCACACACACCTCTGGAGCCTGAAATGCATCAGGAGCCTTTATTGCCTTAGAGCTGGATGGGAGGTGTTACAGTGGAGGGAGGAGGCTGTGCCTGTGGCTCACCTCGCCCCTTTGCAGGGCCCAACGTGGTGGGACACGCAGCAGAGGGCCTGGTCTGCATCACAGTGTCACCTTTGTCATGGAGGAGCTGTCTGGGCCAGCAGTGAGTTCAAGCACGTTGGCAATGGAGTTCCTTTTGGGCAGGCGCCAGAGCTGTAGGCAGGATGCATGAAGTGGTGAGGATTAACCCTTTAGGAACTCTGCTCTGCTGGTCTGTACTGTGCTGAGAGCCTGTTGCACCCAGTCTCTAAGCACAGTGAAGGGGCAGGGGGTAGGACTCCCTCCAGGTTTCCTGCCTTTTCAAGCTGTTCCAGACCTCCACTGGGTGACAGGACTGGGACCAGCAGCCAAAGGTGCAGGAGAGGCTCTCTGCCCCACAGCAGCCCTGACACGAGGTGCTGTGGGGCCTCCTCTGCACATGCAGGGAGAAGAGGAGCCCTCAGGGGGCTCACAGCCCTGCACCCTTGGCTGTTCACTGGAGCTGGCAGCAGGCAGTAAGCAACCAAGGGATCTAGAGGCTATATGGAGGGCTTTCCCCACTGAAGCTCCAGCTGCTTGCACCTGCCTCCCTCTGACCTGTTGGAGTGCACTGACATGCACATGGAGTTCTCCTGCCCTGTGCAAGAATTGATCTGCTTGGATGAGCACCTGGTGGCCCTCCATTCTCCACAGGGGCTGCACTGCCCTGCAAGCAGACCATGAGAGCAGTCTCTTCGTACACTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCTGGGTGGGTACTGGTGCTGCTGGTGTGCTCAGCACTGTTTCCTGCAG
Seq C2 exon
GAGGAGAAGGTGTATGTTCAGCATCGCATCCGGGAGAATGGACAGCTGCTATGGGAGCTGCTGAATGGCCAGAGCGCTCACATCTACCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]