HsaINT0111725 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140110351-140110640:+
Coord C1 exon
chr9:140110351-140110469
Coord A exon
chr9:140110470-140110518
Coord C2 exon
chr9:140110519-140110640
Length
49 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGGAGGGAGCTCCGGCTCAGCCC
3' ss Score
-7.91
Exon sequences
Seq C1 exon
GAAACTTCTTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGACTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAG
Seq A exon
GTGTGTATGCTCAGGGGCTGGGAAAGGAGGGGAGGGAGCTCCGGCTCAG
Seq C2 exon
CCCCCAGCCCTGTTCTCTGCCCTACAGGAGCAGAAAGTATATGTGCAGCACCGGCTCCGGGAGCTGGGGTCGCTTGTGTGGGAACTGCTGGACCGCCAGGGTGCATACTTCTACCTGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_001144026:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100),PF054027=PqqD=PU(14.0=30.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(34.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACTGGGAGGCTGAGTGG
R:
GCCGGTGCTGCACATATACTT
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)